Detailed information on CNT30115974


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673662Oryza nivaraSetaria viridis25.1119.5796.3655forward
CNT30521727Oryza nivaraSetaria italica26.489.1291.3858forward
CNT30443761Oryza nivaraAegilops tauschii25.5711.7996.4356forward
CNT30254859Oryza nivaraAvena sativa31.0525.5695.5968forward
CNT30670083Oryza nivaraTriticum dicoccoides23.7417.2292.3152forward
CNT30142107Oryza nivaraLolium perenne31.518.0392.7569forward
CNT30364335Oryza nivaraSorghum bicolor26.486.6594.8358forward
CNT30148497Oryza nivaraBrachypodium distachyon26.4819.9394.8358forward
CNT30580110Oryza nivaraEchinochloa crusgalli26.488.6693.158forward

Expression of CNT30115974

Peptides detected in this lncRNA

>peptide 1 (49 aa)
PGEEPSRWAGRGWPGIHSAAPVRRRRQQARHAHRAAAPQPARRHCRRRR*

>peptide 2 (71 aa)
RERSRRGGRGVAGPASTRRLLFDDGASRLGTPTALQLLSPLVAIAAAAASFSSSSSSSSNTPARRRSRKKRW

>peptide 3 (71 aa)
GRGAVEVGGAWLARHPLGGSCSTTAPAGSARPPRCSSSARSSPLPPPPLASPPPPPPPRTHQQEDEVGRRGG

Sequence

>CNT30115974
CCGGGAGAGGAGCCGTCGAGGTGGGCGGGGCGTGGCTGGCCCGGCATCCACTCGGCGGCTCCTGTTCGACGACGGCGCCAGCAGGCTCGGCACGCCCACC
GCGCTGCAGCTCCTCAGCCCGCTCGTCGCCATTGCCGCCGCCGCCGCTAGCTTCTCCTCCTCCTCCTCCTCCTCCTCGAACACACCAGCAAGAAGACGAA
GTAGGAAGAAGAGGTGGCC