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Detailed information on CNT30115967


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552872Oryza nivaraOryza glaberrima53.4459.398.31590forward
CNT30105774Oryza nivaraOryza longistaminata32.2520.7198.6356forward
CNT30100483Oryza nivaraOryza rufipogon62.5960.499.42691forward
CNT30575459Oryza nivaraOryza barthii58.793.6499.23648forward
CNT30603669Oryza nivaraOryza punctata62.8648.4693.8694forward

Expression of CNT30115967

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MQEVKNQPCSSIKVEKQRVQRKKELLNRKKKNL

>peptide 2 (31 aa)
MGWACKNLGSWKEKKSSSGGRGRKRRKKKRS*

Sequence

>CNT30115967
GACAAGCACGTGAGAAAGGTACATATAGTTACATAAGCTACTGAATTTCCAACATGTAACAAGGGATTACAGCTTAATTCTCGACCGGCCGCGCCGTTAA
AAAAACAACCGGCAGCTCAACCAGGAGATCAGATCACTGAGTACACCAACGACACTTGCACGACGACGTAATACCAACGACCTTACTACTACTGAGTACT
GACTAGTTACTGCTACTCGTAGCAGCCATGGCCGACGTCTAAAATGCCACCGAGCCATGGAAGCCACGGAATTCAGAGAAGATTACACAGCTAGTTGAGT
TGAGTGACTCTAGCTTGACGAAGACTACTACTAGTACTAGTAATAGACTAGTAGTAGCTGCTTCTGCTTGTTTATGAGAGGATTGAATCCCAGTCGATCT
CCCAGGACGGGTACTTGCGCAGGTGGAATGTCTCCGACTCGTCCCATGGCGCCTCCGTGAAGTCCAGCTTCTCCATCTCCGGCACCGGGGGCGACAGCGG
CGTGGGCAGAGGAGGGGAGCCGGCGGACACCGAGTCCTCCCCTTCCGTCGACGCCGAGCACTTGGGGGACTCCGGCTCCGCCGCGGAGGCCGCTGACTCG
GCGGGGGTGTTCTTGGACGAGCTCGTGGCGAGGGACTGGCAGATGGCGGTGAGCTTGGCGTCGACGGAGGCGTGGAGCGGGCCGGCGAGGTGGTGGTGGC
GGCGGCGGTTGTGATAGAGGAAGTGGGATAAGATGGGGTGGGCATGTAAGAATCTTGGCTCATGGAAGGAGAAGAAGAGTAGTAGTGGTGGCAGGGGGAG
GAAGCGGAGGAAGAAGAAGCGCTCCTAATAAAAGGTTCGAGCGCTTTCATGAGCTCCTGATCCGAGGATGCGATCTGGTGTGTGCTAGTGTTATACTTGT
ACATGTCTATTGCTGCGGCCATGAGGACTGGATGGAGGTAGAAGATGAAGATGGCAAGGGTATGGAAATCTTAAAAACAGGAAAGAAAAAAGGGGTGCTT
TTTGGATGCAAGAAGTGAAAAATCAGCCCTGTTCCTCAATAAAAGTAGAGAAACAAAGGGTGCAAAGAAAGAAAGAGCTTTTGAATAGAAAGAAGAAAAA
TTTG