Detailed information on CNT30115946


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670750Oryza nivaraSetaria viridis13.4623.4893.5177forward
CNT30587119Oryza nivaraMusa acuminata10.6624.395.0861forward
CNT30552732Oryza nivaraOryza glaberrima62.947597.22360forward
CNT30100161Oryza nivaraOryza rufipogon69.5870.69100398forward
CNT30550530Oryza nivaraOryza brachyantha27.6221.8896.84158forward

Expression of CNT30115946

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MSTAVGGGAGLAVSACGGSGASMAGAGWYSTCGCDGAGGSRRSACGTAAPPGPG*

>peptide 2 (36 aa)
QNVSCPKAGRQEGKNLQELTCGIKESLLHPTDDRLC*

>peptide 3 (32 aa)
TKCVLPKSGKAGREKFAGTNVWNQRIVAASYR*

>peptide 4 (84 aa)
MHVRVRACVRTCCLISEDQKSKIILRNFSMCSACSEMATDRLPSPLALGSTKASPSYAMPPGPMNTGRPQPKSASWIGSRSGTA*

Sequence

>CNT30115946
CACAAAATGTGTCCTGCCCAAAAGCGGGAAGGCAGGAAGGGAAAAATTTGCAGGAACTAACGTGTGGAATCAAAGAATCGTTGCTGCATCCTACCGATGA
TAGGCTGTGTTAAGAACCACCCCGCCTCCTCTCCATGCATGTGCGCGTTCGTGCGTGCGTACGTACGTGTTGTTTGATTTCAGAGGATCAGAAGTCGAAG
ATCATCTTGCGGAACTTCTCCATGTGCTCGGCCTGCAGCGAGATGGCCACCGACAGGCTGCCGTCGCCGCTGGCGCTGGGGAGCACGAAGGCGAGCCCCT
CGTACGCGATGCCGCCGGGGCCCATGAACACCGGCCGCCCCCAGCCGAAGTCGGCGTCGTGGATCGGCAGTCGGAGCGGGACAGCTTGAAGATGTCCACG
GCGGTGGGCGGCGGCGCCGGCTTGGCGGTCAGCGCCTGCGGCGGCTCGGGGGCCAGCATGGCGGGCGCCGGCTGGTACTCGACGTGCGGGTGCGACGGCG
CCGGCGGAAGTAGACGCTCGGCGTGTGGAACCGCGGCACCACCAGGTCCAGGCTAGAGTTCCACAGCCTCAC