Detailed information on CNT30115945


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369565Oryza nivaraOryza glumipatula10.1332.53100121forward
CNT30603743Oryza nivaraOryza punctata23.9350.2696.85286forward

Expression of CNT30115945

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLVSRVTSDCNQASRINLLVSSQTSYYPPALHSHR*

>peptide 2 (36 aa)
MFSRLLKNHLNGYKKFWKNLTTSIQHIYATQLNLKSK

>peptide 3 (39 aa)
MKNDRGGQGLSIPGASRAGTLGHEGDNSPRKPQTHMLLP*

>peptide 4 (67 aa)
MERGSPDISWLAALASLLARFCKGSRAEGDDGDDDGPAAAGDHGATPRQMASASAKHFSSAHKIKFC*

>peptide 5 (44 aa)
MIGAAKAFQFPVPHVPAPLAMKATTHPESPKLTCFSPKKQIHVS*

Sequence

>CNT30115945
TATGCTTGTAAGCCGGGTAACTAGCGATTGTAATCAAGCATCCAGAATCAATCTGCTGGTCAGTTCACAGACTAGTTACTACCCTCCAGCCTTGCACAGC
CACAGATAAAAACCATCAAATTCAGCTAAATTTATATCTGAATCGTAGGAGGTGATGGAACGCGGATCACCCGACATCTCCTGGCTGGCGGCGTTGGCGT
CCTTGTTGGCGCGTTTCTGCAAGGGTTCCCGCGCCGAGGGTGACGACGGCGACGACGACGGACCGGCCGCCGCCGGCGACCACGGCGCGACGCCGCGGCA
GATGGCTTCGGCTTCTGCCAAACACTTCTCCAGTGCTCACAAGATAAAGTTCTGCTAGAATCGTACTAACAGTTTTGTTTATTGAATCCTTTTTACCCTA
ATACAATAACTGCTTCAGCAGCTTGATTGTCTGGTTGGTCTATCTGAACTACCCTGCATGAGAGGCCAAGTGTAAATCTATGAAAAATGATAGGGGCGGC
CAAGGCCTTTCAATTCCCGGTGCCTCACGTGCCGGCACCCTTGGCCATGAAGGCGACAACTCACCCCGAAAGCCCCAAACTCACATGCTTCTCCCCTAAA
AAACAGATCCATGTTTCATAATCCAACCGAAAAGAGACATGATGCAGCGAACAGAGCAGGTGCGACGTACTGTACTGGCACTGTAGCAGCATGGTAATAA
CTTGGCGGTGGCTATGGCGTTGGATCGATGCGTTGGCCACGTGATCGATGCTCTCAGATCTGAGTGACGATCGAGCACTGCGGGAGGATATCTTAATCGG
GAGTTAATTTAATCGCGGGCCGGAGTTGTTTACTGATCCCTAAACGGATTCCTCAGCTTTGCAGTTCTGCAGAGGGAATGTTCTGATCAGAGCAGAACAG
AGGAGAGGACAGGAGAGGCACGTCCACCGATCACGCACTGCCTGCCTGCGCTGTCAATGATGGGATCAAATCATTTCGATCGGGATCGATCTAATCTAAA
GAACTACTAATCCGGCCGGCATGCACAAGGTGACATGCAATGCTTTCGCATCTGCCGGGAAACTATTCTAATCCCTCGAGGGAATGTTCTCTCGTTTGCT
TAAAAACCATCTAAACGGCTATAAAAAATTCTGGAAAAATTTGACAACATCCATACAACACATATATGCAACTCAACTAAATCTTAAGTCCAAAC