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Detailed information on CNT30115936


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002760, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691044Oryza nivaraOryza sativa55.0251.9799.29422forward
CNT30555251Oryza nivaraOryza glaberrima12.7824.0896.9498forward
CNT30596989Oryza nivaraOryza meridionalis14.0826.5493.52108forward
CNT30369658Oryza nivaraOryza glumipatula28.5510097.72219forward
CNT30109832Oryza nivaraOryza longistaminata25.1658.8495.34193forward
CNT30575314Oryza nivaraOryza barthii30.5123.15100234forward

Expression of CNT30115936

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAFRYRLFLIFVTVEIVMLIVRSTASDFRSGSSGIAG*

>peptide 2 (41 aa)
MQYRAQPISHRVSLFASSMPNVAHMNTSAYLHIHLHISSPSI

Sequence

>CNT30115936
AGAAAGAAGATTAAGGCTCTGTGTTTAGCTATCGGTGAAAGCGGAGAGATATTCATTTCTGCCCCTATTTGATCATGGCTTTTAGATACCGCCTGTTTCT
TATATTCGTGACGGTGGAGATCGTTATGCTTATTGTCCGAAGCACAGCATCAGATTTTCGGTCAGGTTCATCAGGGATAGCCGGATAGAACTATCTGAGA
TGAAATCATCTCGGACGGGTTTTGTTCAAGGATATTAAACTTTTGAGGTCAAGTCCGATATGCAACGCATGTCCATGCTGCCCATGCAAATGCTGATCAT
TACCATGTCGTCGTTGTTCTCTTCGTAACCGCATTGAGCAAATTCAATTGTTTTGATGTTTTGTATTTCCTCATCAGGTTCTATTTTGTAATATACCAAT
TCAGAAGCACATACATGTAGTACAATTCAACACATCAATCAATGGCTTATCATCAGCTGATAACAACCAAAACCGTACCCTTTTTTTTCTCTTTTTTTTT
AAAATTTTTTTAGGCTCTTCAAGTTATCCCTTCTTTCTATAAAGTTAAGGACAAAAGCTCAAACCTTGTGCTTTCACGTCATCATCAAATTGTGAACCGT
TGGATGAATGTATTAGATTGTTTCTCAGACGTTAGATGGAATGCAGTATAGAGCCCAACCCATCAGTCACCGAGTGAGTCTCTTCGCCTCCTCAATGCCA
AATGTAGCCCACATGAACACATCGGCCTATCTCCACATACATCTACATATATCCAGTCCGTCAATCC