Detailed information on CNT30115921


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110813Oryza nivaraOryza longistaminata35.8998.0794.97815reverse complement
CNT30577454Oryza nivaraOryza barthii95.4293.2895.152167forward

Expression of CNT30115921

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MEGRRRVRGEGLALLSPGTSWERRQRGREERWGWGERRPGGGGCEPVTKRGCEAAAAARRVERGQSANYF

>peptide 2 (72 aa)
LKVEQCRFVCEAPHVMVDMEPTLVANLLTYWEVFFVIKCGMPFLMPPAFCHVLYNMKNGFPLNIESNTQYSR*

>peptide 3 (54 aa)
PQGRAMSLCLRSSSCNGRHGTHTGRQFVDILGSLFCDQVWDALPYASRLLPCTI*

>peptide 4 (56 aa)
MWRPRRRGGAVRRTRIPSACHHRAPPPIQQPGGGDGGGPDLSRSRSRSPVAMLPRA*

>peptide 5 (33 aa)
MQYVAIKELKSPQDPWYLAPASKSTWQVEVVCL*

>peptide 6 (32 aa)
MGEAATRTRGEVGVGGEAARRWRLRACDEEGM*

>peptide 7 (38 aa)
MVSCPCIKIHMAGRGSMLVMARWICSPNPVVSFKVVKQ*

>peptide 8 (35 aa)
MISMQQQIKTLFFYLLAQCIVLLSDIFGWICYIFS*

>peptide 9 (43 aa)
MHSPAVRYIWMDMLYIFMNYKSHSPANNNLITSNCLFSLLIQF*

>peptide 10 (38 aa)
MTTIGRVLSTISKGCNFVWLFREPQVPDSVQCCHHSSS*

>peptide 11 (54 aa)
MTSHDNHWQSTFDDQQRLQFCLAIQRTPSSRLSAVLSSFIKLVKYSSPSILIIT*

>peptide 12 (50 aa)
MRRRWRVAGACEERASPCSHRGRHGRGGNEDERRGGGGGRGGQEVAAASL*

Sequence

>CNT30115921
CCTCAAGGTCGAGCAATGTCGCTTTGTCTGCGAAGCTCCTCATGTAATGGTAGACATGGAACCCACACTGGTCGCCAATTTGTTGACATATTGGGAAGTC
TTTTTTGTGATCAAGTGTGGGATGCCCTTCCTTATGCCTCCCGCCTTTTGCCATGTACTATATAACATGAAAAATGGGTTCCCATTGAACATTGAGTCCA
ATACTCAATATTCACGGTAGTAAACATCATATTACAAATAATCTGAATATATACATAAAAGAAAGGTACCAGAGAGAATTATCACACTGAAATGGATTCT
TAAACTCCCTCCATACAAAAAACTGAATTATGTGCCTTTAGATAGATTCATACATTGCTAAAGACCAGTTTAACTAATGTCGTTATATTATCATTTTGAA
GCTTGAGAAACATATCTCAGATTCATCCCAATAGTTGATAATATGAGCGCAAGCCTCCTCCGGTCCTCCCGCTATCACCCTGGATCATTACAAATGCGCA
CGGAAATGTGTTAACAGTTCTCTGAACTAATAGCGAAATAAACAGGTGTTCTGTAAACAAATAAAAGAAGAAAATATACATATATACCAGCTACATGATA
GTGCTTGCTAGCTCATCTCTGAAGATATTTGCAAGTGCAACCAGTTAGTATTAAGATAATACAAGATTGCTGCTACCCAGCCATGACAAGCCATGACAAC
CATTGGCAGAGTACTTTCGACGATCAGCAAAGGCTGCAATTTTGTCTGGCTATTCAGAGAACCCCAAGTTCCCGACTCAGTGCAGTGCTGTCATCATTCA
TCAAGCTAGTGAAATACTCATCTCCTTCCATTCTCATTATTACATAGAAAAAAAAACAAGAAGTTTGACATGATCAGTAAGCAATTACAACAAATAAAAA
CCTGATATTTGACATGATAAGTATGCAACAACAAATAAAAACTCTCTTTTTCTACTTGTTAGCACAATGCATAGTCCTGCTGTCAGATATATTTGGATGG
ATATGCTATATATTTTCATGAACTACAAATCACATTCACCAGCCAACAACAATTTGATTACTTCCAACTGCTTATTCAGTCTGCTTATTCAGTTTTAGTT
GTTCATACAATGAAGAAAAAAATTATTGGCTTCCAAAAGTGAAACTTAAGCAAATATTCAGATAGTCTGTCCAAGCCGGCAAATGAACTCCTGAGAACAC
GAAAAATGAAGTATTTGTTTCACATATCATCTAACCAACACTAATCTGCATACCCCAGAAGCAAGAACCAGTAACAAAAACCACTCAGCTAGACTAAGTG
TATGTTTTTAACCAATTCCACACACTTCTCTACAAGGATGCAATTTTCTATTTTAAACCACATGACACTTTCTTGATTCCTCCTACCTAAAATTAACTAT
ATTGTGACTCTCTAAAATGCAATATACGAAAACTTGTAAAACTCTCACCCTTAATCTTTGACCATTACCCAAACTAATAAACAACACAATCTGTTAATTA
AGATGTGCATTCCTACCAGCAAATTTGATGCAAGATCCACGGTAAGGAAGATCCAACTGAACAAATGCAATACGTAGCAATTAAAGAGCTTAAATCTCCC
CAAGATCCATGGTATCTTGCCCCTGCATCAAAATCCACATGGCAGGTAGAGGTAGTATGCTTGTGATGGCGAGGTGGATTTGCAGTCCAAATCCGGTGGT
GTCATTCAAAGTGGTAAAGCAATAAACGACGCTGCGGTTGGCCGTGGGCGACGAGGCCGTGCGGCGGCTCCGTGCGATGTGGAGGCCGAGACGGCGTGGT
GGGGCTGTGCGGCGGACACGAATCCCCTCGGCTTGCCACCATCGAGCTCCTCCCCCAATCCAGCAACCAGGAGGAGGGGACGGCGGCGGGCCGGATTTGA
GCCGCAGCCGCTCGAGGAGCCCCGTCGCCATGCTGCCCCGAGCTTGAGAGGGGAGAGGCATTGTCTTCGTCGGATCTCGTCGCTGCCGGCGTGCTGCTCC
CCAAGTCCCTGCGCGCCGTCACCGAGCTCCTTGCCCCCATCAAGCGACGATGAGGAGGAGATGGAGGGTCGCCGGCGCGTGCGAGGAGAGGGCCTCGCCC
TGCTCTCACCGGGGACGTCATGGGAGAGGCGGCAACGAGGACGAGAGGAGAGGTGGGGGTGGGGGGAGAGGCGGCCAGGAGGTGGCGGCTGCGAGCCTGT
GACGAAGAGGGGATGTGAAGCAGCGGCGGCGGCGAGGCGTGTGGAGAGAGGGCAGAGTGCGAACTATTTTC