Detailed information on CNT30115919


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003224, E-value = 2e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691327Oryza nivaraOryza sativa1008.3297233reverse complement
CNT30552615Oryza nivaraOryza glaberrima1009.5399.14233reverse complement
CNT30595788Oryza nivaraOryza meridionalis104.2920.0790.53243reverse complement
CNT30369580Oryza nivaraOryza glumipatula10025.7599.14233reverse complement
CNT30575434Oryza nivaraOryza barthii1007.5599.14233reverse complement
CNT30603626Oryza nivaraOryza punctata78.117.2490.11182reverse complement

Expression of CNT30115919

Peptides detected in this lncRNA

>peptide 1 (76 aa)
HGAARVWATATATATASDEATGGRPAHFKTGAEKGLEGSNRCFQNSKWGGRKGRKIGAVEFGFFGEGDERREGTERG

>peptide 2 (35 aa)
MVRQGCGRLRLRLRPRAMKRRVGGRRTLKRGRRRV*

Sequence

>CNT30115919
CCATGGTGCGGCAAGGGTGTGGGCGACTGCGACTGCGACTGCGACCGCGAGCGATGAAGCGACGGGTGGGAGGCCGGCGCACTTTAAAACGGGGGCGGAG
AAGGGTCTAGAAGGATCGAATCGATGTTTCCAGAATTCCAAGTGGGGGGGTAGAAAAGGCAGGAAAATTGGCGCAGTGGAGTTCGGCTTTTTTGGCGAAG
GGGACGAGAGGAGGGAGGGAACGGAGCGCGGCG