Detailed information on CNT30115855


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671184Oryza nivaraSetaria viridis58.7137.1990.91209forward
CNT30535437Oryza nivaraEucalyptus grandis40.4540.3484.72144forward
CNT30221631Oryza nivaraHordeum vulgare35.969.1888.28128forward
CNT30362596Oryza nivaraSorghum bicolor49.4429.7886.93176forward
CNT30318651Oryza nivaraAsparagus officinalis42.744.8484.21152forward
CNT30102464Oryza nivaraOryza rufipogon38.485.3988.32137forward

Expression of CNT30115855

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSFAIELARMLRTTNQANASSVQLAAVECGVKR*

>peptide 2 (84 aa)
LRCRRCSGVGGVDGGVRLVLVPDHGGHRDVQEEERRDELRDHRAVQRPLGQLLHVDQRRRRRVGVVLRRELAALRRRRLNVFRH*

>peptide 3 (36 aa)
MYRKRSVAMNSAITARYSDHLVSSSTSISGAGGGSV*

Sequence

>CNT30115855
ACCTGAGATGCCGGCGGTGCAGCGGCGTCGGTGGTGTTGACGGTGGCGTCCGACTGGTGCTTGTACCCGATCACGGTGGCCACCGTGATGTACAGGAAGA
GGAGCGTCGCGATGAACTCCGCGATCACCGCGCGGTACAGCGACCACTTGGTCAGCTCCTCCACGTCGATCAGCGGCGCCGGCGGCGGGTCGGTGTAGTC
CTTCGCCGAGAACTCGCCGCCCTCCGGCGCCGACGCCTCAATGTCTTTCGCCATTGAGCTAGCTAGAATGCTAAGAACAACTAACCAAGCTAACGCTAGC
TCTGTGCAGCTTGCTGCGGTTGAGTGTGGTGTCAAGAGGTAGGAGAGGTATATATG