CANTATAdb - search

Detailed information on CNT30115854

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 9e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-94

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691328	Oryza nivara	Oryza sativa	97.75	99.46	99.46	737	forward
CNT30191038	Oryza nivara	Secale cereale	61.8	52.42	92.49	466	forward
CNT30301530	Oryza nivara	Triticum aestivum	62.07	26.47	93.16	468	forward
CNT30397375	Oryza nivara	Triticum turgidum	61.94	26.84	92.51	467	forward
CNT30253103	Oryza nivara	Avena sativa	61.54	62.96	92.67	464	forward
CNT30667831	Oryza nivara	Triticum dicoccoides	61.41	60.44	92.44	463	forward
CNT30461506	Oryza nivara	Saccharum spontaneum	61.94	39.28	90.58	467	forward
CNT30686251	Oryza nivara	Triticum urartu	62.07	22	91.24	468	forward
CNT30349330	Oryza nivara	Eragrostis tef	62.07	30.19	91.03	468	forward
CNT30595696	Oryza nivara	Oryza meridionalis	96.95	68.77	96.03	731	forward
CNT30150050	Oryza nivara	Brachypodium distachyon	62.07	34.98	91.24	468	forward
CNT30100520	Oryza nivara	Oryza rufipogon	98.14	74.6	92.97	740	forward
CNT30575387	Oryza nivara	Oryza barthii	75.86	100	99.3	572	forward
CNT30583294	Oryza nivara	Echinochloa crusgalli	62.07	24.59	90.17	468	forward
CNT30550711	Oryza nivara	Oryza brachyantha	85.01	91.57	91.11	641	forward

Expression of CNT30115854

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKICICKK*

Sequence

>CNT30115854
TTTAATAAGAATATGCAGCATTTTCAAACTTGCAACTCAGATAAAACATCGACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAGGTTCAAA
TCCAACTTATTCATAAAGCATACTGCTGTCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACAAGTAG
ACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGACCAGGCACATCGGCAGCTCCACCAAACTGGCTGATTACTGACCACCACGGAGGCGGA
GCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGG
GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACA
AAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGC
CAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGT
GATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATCTGCAAGAAATAATC