Detailed information on CNT30115849


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691520Oryza nivaraOryza sativa51.8188.2599.49586forward
CNT30100352Oryza nivaraOryza rufipogon52.8716.6899.67598forward
CNT30550642Oryza nivaraOryza brachyantha15.5629.0490.34176forward

Expression of CNT30115849

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MHFGINRGPSLCSSIIVAHEIDVSSVKASSLFSLTMHIMHQG*

>peptide 2 (53 aa)
MPFHSFLELLLCLTHFHYWRDMHHQWKLIGRGVQEEGQESCGKKWHYKDFEFS*

>peptide 3 (34 aa)
MAWRGVAMCIGCVDRTCRSRSISSSPCHAFPQLS*

>peptide 4 (39 aa)
MHDKKCSKIVVLSLNTQWEQYIADLDEFIITECVYVFLF*

>peptide 5 (30 aa)
MPCLSTAFLNFSCASLTFITGEICIISGSL*

>peptide 6 (30 aa)
AATSFRSHPSLHIYMHTAISILYVYHSLQP*

>peptide 7 (28 aa)
MNLSSRNVSMFFFFEIINVKCIQIFHIFK

Sequence

>CNT30115849
GCTGCAACCTCATTTAGATCTCATCCTTCTCTTCATATATACATGCATACTGCTATAAGTATACTGTACGTCTACCACAGCTTGCAGCCATAAAGCTCTT
CGTCCTCTCTCTTTCTACGGCTGTGGAGCTGAAGCATGGCCTAGCTGAGCTAGCAGCTGGTTCTTGGTTATATAAAGAGAGATAGCTAGGATCAAGAGAG
AGGCAGATGGCATGGAGAGGTGTTGCAATGTGCATTGGATGTGTAGATAGAACCTGCAGATCTCGATCGATCTCTTCAAGTCCATGCCATGCCTTTCCAC
AGCTTTCTTGAACTTCTCTTGTGCCTCACTCACTTTCATTACTGGAGAGATATGCATCATCAGTGGAAGCTTATAGGGAGAGGAGTACAAGAAGAGGGTC
AAGAAAGCTGTGGGAAGAAATGGCATTACAAGGACTTTGAATTCAGTTAGCAATGCCATGAGACAGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGATGTGATGCTAATTTTCCATTTCATGATGTGATGCTAATTTTCCATTTCATGTAAGTTAGCTTTTCATAATTAGATCAAGTTTTCTCTACTT
AATTTGGTGCCCTTTTTGCTTACGTTTTTTTTTCGCTGGGAGGTTTTGCTTACTTAATTTAAGTGCCTGCTAGTTTCTTTTTGCTAGTCCAGCTAGCCAC
TGCATATTTAAATTTTATATCTGCCACTGTCAGCTCCAATTATTTGTCGTTTGTTTTTTCAAACAACAGTCTGCATGCATTTCGGCATCAATAGAGGACC
ATCACTGTGTAGCTCGATCATTGTAGCTCATGAAATTGATGTCTCTTCCGTAAAGGCGTCTTCACTTTTTTCTCTTACCATGCATATCATGCATCAAGGC
TAAAAAGGAATTCAACCTTTTCCATTTTGCTTTGCTTAGTACTACAGTACCATGTAGGGCTTCTCGCATGCATGACAAGAAATGCAGCAAGATTGTCGTG
TTGAGTTTGAATACTCAATGGGAGCAGTATATAGCCGATCTTGATGAATTTATCATCACGGAATGTGTCTATGTTTTTCTTTTTTGAAATAATCAATGTT
AAGTGCATTCAGATTTTTCACATTTTTAAAT