Detailed information on CNT30115832


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689930Oryza nivaraOryza sativa100.2257.298.45453forward
CNT30595555Oryza nivaraOryza meridionalis99.1275.1797.77448forward
CNT30107081Oryza nivaraOryza longistaminata46.0217.0891.83208forward
CNT3099604Oryza nivaraOryza rufipogon99.1248.1799.55448forward

Expression of CNT30115832

Peptides detected in this lncRNA

>peptide 1 (75 aa)
LRCCGATPIFVFPSAATPRAQSVAHPVHTLPSVEPPLLHRAPRVIKSPPLAVVRGKPCCRTAWSKWFSVGVLAAP*

>peptide 2 (61 aa)
MTKNDGPIRSQFLLTAESDWPLLISMNIQSTVSQSPALTGLNLVTKCYGSFNHSQPTDMHI*

>peptide 3 (49 aa)
FVAAAPRQSSFSLPPPHHGLNQSPIPCIRCHPLSLLCYIAPQGSSSHLH*

>peptide 4 (32 aa)
SLLRRHANLRFPFRRHTTGSISRPSRAYAAIR*

Sequence

>CNT30115832
CTTCGTTGCTGCGGCGCCACGCCAATCTTCGTTTTCCCTTCCGCCGCCACACCACGGGCTCAATCAGTCGCCCATCCCGTGCATACGCTGCCATCCGTTG
AGCCTCCTCTGCTACATCGCGCCCCAAGGGTCATCAAGTCACCTCCACTAGCCGTCGTGCGGGGCAAGCCTTGCTGCCGCACGGCATGGAGTAAGTGGTT
TTCCGTCGGAGTCCTTGCTGCCCCGTGATTCTGCCACCAGAGCATTCTCGAGTCCGCATATGACAAAAAATGACGGACCAATTCGATCGCAGTTCCTCTT
GACAGCGGAAAGCGACTGGCCTCTGCTTATTTCAATGAACATACAGAGCACTGTATCACAATCGCCTGCACTAACAGGATTAAACTTGGTTACTAAATGT
TATGGTTCCTTTAATCACAGCCAACCAACGGATATGCACATATGAGGTAAAA