Detailed information on CNT30115824


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690702Oryza nivaraOryza sativa100.4210098.75240forward
CNT30728922Oryza nivaraCorchorus capsularis22.1819.5690.5753forward
CNT30552070Oryza nivaraOryza glaberrima10010099.16239forward
CNT3066610Oryza nivaraLeersia perrieri100.4299.1792.5240forward
CNT30595512Oryza nivaraOryza meridionalis98.7498.7496.19236forward
CNT30369412Oryza nivaraOryza glumipatula101.2610097.52242forward
CNT30107154Oryza nivaraOryza longistaminata10010098.33239forward
CNT3099525Oryza nivaraOryza rufipogon100.4210098.33240forward
CNT30574848Oryza nivaraOryza barthii10010099.16239forward
CNT30603505Oryza nivaraOryza punctata98.7498.7493.64236forward
CNT30551841Oryza nivaraOryza brachyantha100.8497.1885.89241forward

Expression of CNT30115824

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRPRRRGKSQRSRPPLREGAETRVEPFGREPRS*

>peptide 2 (78 aa)
RAHDEVSGLFVALESPRALNRRDAAAEARKVSALAPSSSRGGRDTCGALRARAEIIMANYTVIHLIHLRINRTGLTIVC

Sequence

>CNT30115824
CGAGCACATGACGAAGTGAGCGGGCTCTTTGTAGCCCTGGAAAGTCCCCGGGCCCTCAACCGCAGAGATGCGGCCGCGGAGGCGCGGAAAGTCTCAGCGC
TCGCGCCCTCCTCTTCGCGAGGGGGCAGAGACACGTGTGGAGCCCTTCGGGCGCGAGCCGAGATCATAATGGCCAATTACACAGTTATTCACTTGATCCA
TCTCCGGATTAACAGAACGGGGCTTACGATTGTGTGCAA