Detailed information on CNT30115823


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Oryza nivaraOryza sativa10010099.37318forward
CNT30552322Oryza nivaraOryza glaberrima100.31102.2496.24319forward
CNT3066721Oryza nivaraLeersia perrieri42.4543.1391.85135forward
CNT30623316Oryza nivaraDaucus carota25.7926.9787.882forward
CNT30361461Oryza nivaraSorghum bicolor44.3445.7890.07141forward
CNT30369487Oryza nivaraOryza glumipatula101.26107.6988.82322forward
CNT30108933Oryza nivaraOryza longistaminata100.31102.991.85319forward
CNT3099765Oryza nivaraOryza rufipogon100.31100.3198.43319forward
CNT30574593Oryza nivaraOryza barthii100.31102.2496.24319forward

Expression of CNT30115823

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PSSVARACNPSGGTKGGCGCLVWILILGPMLL*

Sequence

>CNT30115823
GCCGAGCTCAGTAGCGAGAGCCTGTAACCCAAGCGGGGGCACTAAGGGTGGCTGCGGATGTTTGGTGTGGATTCTGATCCTGGGCCCCATGTTGTTGTAA
TCTTGCTGGCTTGCCCGTTCCAAGTTGCGTAGTGGGCCGGAGGGACTTTGGCGAAGGCCTTTGCTTTGCTTCTCCGGCCCTAAAGTGGCAGGCACAGCGT
GAGGCTGGCTTCACAGAGCAGCGATCACTGCCCGCTTCCATCGGTGGAAGGATAACAGGCTGCTGCACCTTGGGCCCGCTTCTGGCCCAGAGTCCCTCTA
CAACAGACCACCATCTTT