Detailed information on CNT30115821


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697958Oryza nivaraOryza sativa72.8168.2796.87383forward
CNT30104662Oryza nivaraOryza rufipogon46.7720.8396.34246forward
CNT30578571Oryza nivaraOryza barthii42.0227.6997.74221forward

Expression of CNT30115821

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MREGGGEMTGSAREGKRLLYPPLPSPPTVDPRERGRTSDGICEGGEEVAGSAPPIAADAAITKTATTDHFAGEPQDAQIQVL*

>peptide 2 (62 aa)
MGYVREGKRSLDPPLRSPPMPPSPKQPPPIISLESRRMPKSKSYEEESHGDPVSERAGGRRD*

>peptide 3 (45 aa)
AILKPSLRPAGQLLANLRERGRRDDGIHAGGEVVTRSDASVAADG*

Sequence

>CNT30115821
GCCATCTTGAAACCTTCTCTCCGACCAGCCGGACAGCTACTGGCAAATCTGCGCGAGAGGGGGCGGAGAGATGACGGGATCCATGCGGGAGGGGAAGTGG
TCACAAGATCCGACGCTTCCGTAGCTGCCGATGGCTGATCCATGCGAGAGGGGGGCGGAGAGATGACGGGATCAGCGCGGGAGGGGAAGAGGTTGCTGTA
TCCGCCCCTCCCATCGCCGCCGACGGTGGATCCGCGCGAGAGGGGGCGAACAAGCGATGGGATATGTGAGGGAGGGGAAGAGGTCGCTGGATCCGCCCCT
CCGATCGCCGCCGATGCCGCCATCACCAAAACAGCCACCACCGATCATTTCGCTGGAGAGCCGCAGGATGCCCAAATCCAAGTCCTATGAGGAGGAAAGC
CATGGGGATCCAGTGAGTGAGAGGGCAGGAGGGAGGAGGGACTGAGGGAGAGAGTTGTTTGGTCTGGGTGAGTGGGAGGGGAGGAGGGAGAGAGTCAAGG
AGAGACCGTTAGAAACTGGGAGAAAT