Detailed information on CNT30115802


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690675Oryza nivaraOryza sativa55.3289.6698.56208forward
CNT30109765Oryza nivaraOryza longistaminata97.0798.9294.52365forward
CNT30574594Oryza nivaraOryza barthii28.7224.1699.07108forward

Expression of CNT30115802

Peptides detected in this lncRNA

>peptide 1 (61 aa)
PSLTGSAIPGGTKFSIPFSGSEIPPGATSSMPLPGSAVPKGITSMSSSGSLIVGDATSSMP*

>peptide 2 (50 aa)
MPSSGSTIFGGATSSMPTSGSIITGGAPTLPGSILAGDVTPMPPASSCLNG

>peptide 3 (41 aa)
MPPPPCLDRVLQFLEVPHPPCLHQVLRFLEVPHPPCLHQVQ*

Sequence

>CNT30115802
GCCATCTTTGACAGGTTCTGCAATTCCTGGTGGCACCAAATTCTCCATACCTTTCTCAGGTTCTGAAATTCCTCCAGGTGCCACCTCCTCCATGCCTTTG
CCAGGTTCTGCAGTTCCTAAAGGCATCACCTCAATGTCTTCATCAGGTTCTTTGATTGTTGGAGATGCCACCTCCTCCATGCCTTGATCGGGTTCTACAA
TTTTTGGAGGTGCCACATCCTCCATGCCTTCATCAGGTTCTACGATTTTTGGAGGTGCCACATCCTCCATGCCTACATCAGGTTCAATAATTACTGGAGG
TGCCCCCACATTACCAGGTTCTATACTAGCTGGAGATGTCACGCCAATGCCACCAGCTAGCTCCTGTCTCAATGGT