Detailed information on CNT30115788


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000177, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552286Oryza nivaraOryza glaberrima99.8493.8599.06641forward
CNT3066724Oryza nivaraLeersia perrieri20.2544.5286.92130reverse complement
CNT30595465Oryza nivaraOryza meridionalis89.2596.1494.42573forward
CNT30369297Oryza nivaraOryza glumipatula97.5110098.72626forward
CNT30106043Oryza nivaraOryza longistaminata44.8681.1397.22288forward
CNT3099917Oryza nivaraOryza rufipogon99.3893.4199.06638forward
CNT30574627Oryza nivaraOryza barthii91.12100.1798.97585forward

Expression of CNT30115788

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MDPAERVVKAAWYKGAVVTHRPKPVSPIVNQSKNKNKQAKKSKPTAPSKK*

>peptide 2 (38 aa)
MYVCCENKMIEILYSVMFTLTSWLKFGNKLFLETKALFD

Sequence

>CNT30115788
CTGATCGATCCAAGATCTAATCAAGAATCTCAGCGCATTTTCCGTTGTCAGTTCGGCCATTAAGCCCCATATATAAGCCTCCTGATAATATCAGTAGGAG
AAACAGGCCATTGTGGATATATACAAGCACAGAAGAACAAGTAAATATAATCGACAGAGAACTGAAGCCGACGAGGTCTCGACAGGCGAAATATGGATCC
TGCAGAGAGAGTGGTGAAGGCGGCATGGTACAAGGGCGCTGTCGTCACTCATAGGCCGAAGCCTGTTTCGCCTATCGTTAACCAGAGCAAGAACAAGAAC
AAGCAAGCCAAGAAGTCCAAACCAACTGCACCCAGCAAGAAGTGATAAACTTAACTGGCTGCCTGCCTCTACTACACAGTATGTATGCAAACCGAAAGAC
TGGCTAATTAGGGGGTTTAATCTTCAGGATTCAGTTCAGGTTTGAGCTGAACACTGAAGAAGTGGAGTACTTGGATACAGTTAATTTTACCTGTTCAAAC
TTCAAACAGTCCTACAGGATGCCGGATGTATGTGTGTTGTGAGAATAAAATGATTGAGATACTATACTCTGTGATGTTCACATTGACCTCCTGGTTGAAA
TTTGGGAATAAATTATTTCTGGAAACAAAGGCATTATTTGAT