CANTATAdb - search

Detailed information on CNT30115776

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690531	Oryza nivara	Oryza sativa	39.29	56.69	90.56	233	forward

Expression of CNT30115776

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPPPPADPPPGDDASSSSFRCTRRRSGVRRGAVAGREVMSS*

>peptide 2 (35 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAGRSAARR*

>peptide 3 (60 aa)
MASSSVGRRRGRRRRRRRRSWRAGSGPSRGRAPTTPPSPPATTTRPSPASSPPRPSLPPPP

>peptide 4 (63 aa)
MDGWRRRRSDDGEVGGVGVAGEVGGPVVARHGVGHPRHLPRRRRRRPVLRLRHPRRALPFHRRR

Sequence

>CNT30115776
GTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACT
CGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAAACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCA
CGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCG
TCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAGATATAT
ATGGATGGATGGCGTCGTCGTCGGTCGGACGACGGCGAGGTCGGCGGCGTCGGCGTCGCCGGCGAAGTTGGAGGGCCGGTAGTGGCCCGTCACGGGGTCG
GGCACCCACGACACCTCCCTCGCCGCCGGCGACGACGACCCGTCCTTCGCCTGCGTCATCCCCGCCGCGCCCTTCCCTTCCACCGCCGCCGCC