Detailed information on CNT30115743


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 9e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298748Oryza nivaraTriticum aestivum29.6169.183.99331forward
CNT30393324Oryza nivaraTriticum turgidum29.6131.4384.59331forward
CNT30665882Oryza nivaraTriticum dicoccoides29.6135.984.29331forward
CNT30684702Oryza nivaraTriticum urartu23.9731.4285.07268forward

Expression of CNT30115743

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TRGIKFGLSIVLHISIVFDDLYNIFITMCMCI*

>peptide 2 (45 aa)
MLACSYLHTADPSTVADAAEAGAVGAAADGEPGGGRRGHHGGRHC*

>peptide 3 (54 aa)
MKLINCTCLTLSKPMMRTNASGYAFLASSSSLSTWVASVHPNIGSFHMVQYLPS*

>peptide 4 (68 aa)
MRMKIPIKLVLILCWLVHTCIQLILPPLLTLPRPALLERRLTGSPAVADEAITVGAIASSLAFCLVRC*

>peptide 5 (66 aa)
MHALQPMLIHTYVHTYTADVDTNKMKKKTEATNWERGNQCKVARFERSKLPKPNRSIESPLYRAHE*

Sequence

>CNT30115743
ACCAGAGGTATCAAGTTTGGTCTGAGTATAGTATTACATATAAGTATCGTTTTTGACGATTTGTACAATATATTTATTACGATGTGTATGTGCATATGAT
TAGCCTGGTGCTAGCATTCACATATGCATGCTCTTCAACCTATGTTGATACATACATATGTACATACATACACAGCTGATGTTGACACAAACAAGATGAA
AAAAAAAACTGAAGCAACAAACTGGGAAAGGGGAAACCAATGCAAGGTGGCCCGATTCGAACGTTCAAAGCTGCCAAAACCGAATAGATCAATCGAGTCT
CCTCTGTATAGAGCTCACGAGTGAGCTTGCTGGCTTGCCAACTAGCTTAGTTTCCGCCGGACTCCTCGCAACCCGGGGGCTTGTAGGCGATGAAGCTAAT
CAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATGCGAACAAATGCATCTGGATATGCCTTCTTGGCCTCCTCGAGCTCTTTGAGCACCTGGGTGGCA
TCAGTGCATCCGAACATAGGCAGCTTCCACATGGTCCAGTACCTGCCATCATAGTACCCAGGAGACCTGTGGTTCTCACGGTAGACGAACCCGACCTTAC
TAAACTCGAGGCAAGGCACCCATTTGGACCGGAGCAGGTACGACAGGGTCTCAAACTTCTTGATGCCTTCAATCGGCCACACCTGCGCAGAGAAATCATA
TGGGTTAAAGTTGATGAGCTCTCTTTAATTTCCTGTGTGTGTGATGAGGATGAAGATACCAATTAAGCTTGTACTGATCCTATGTTGGCTTGTTCATACC
TGCATACAGCTGATCCTTCCACCGTTGCTGACGCTGCCGAGGCCGGCGCTGTTGGAGCGGCGGCTGACGGGGAGCCCGGCGGTGGCCGACGAGGCCATCA
CGGTGGGCGCCATTGCTAGCTCTCTAGCTTTCTGCTTGGTGAGGTGCTAGAGCAGAGTCACGCTGCAGCAGTGGCTTGAGGACCTGTGTGGTAATCCATT
ACGTCTATAAATAACCAAATCGCAGGTGGCATTGGAAGGCAGCGCTTGGTTGATCCGGGGATGTGGAAAGAGTGGCTGCCGTTCGCTGGTCCAAAGCACG
GGTGACTGGCTGGCTGCT