Detailed information on CNT30115740


BLAST search results

BLAST vs Swiss-Prot:
sp|P85087|GLNA_VITSX, E-value = 3e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691310Oryza nivaraOryza sativa65.5384.69100249forward
CNT30671311Oryza nivaraSetaria viridis3040.1490.35114forward
CNT30225888Oryza nivaraHordeum vulgare31.5823.1791.67120forward
CNT30552642Oryza nivaraOryza glaberrima72.8943.2896.39277forward
CNT30250012Oryza nivaraAvena sativa22.1114.5190.4884forward
CNT301731Oryza nivaraZea mays22.1114.5192.8684forward
CNT30351207Oryza nivaraEragrostis tef2011.6692.1176forward
CNT30364720Oryza nivaraSorghum bicolor46.5827.9291.53177forward
CNT30369697Oryza nivaraOryza glumipatula72.8945.34100277forward
CNT30100365Oryza nivaraOryza rufipogon27.6317.65100105forward
CNT30575246Oryza nivaraOryza barthii73.165088.85278forward

Expression of CNT30115740

Peptides detected in this lncRNA

>peptide 1 (58 aa)
AQQELYIKVITNNNDDKTTCGKEDDDPQDGTSTVAQMQFTRSSDQWSNRSDTASWGGR*

>peptide 2 (80 aa)
MEQPERHGELGRTMTRMSWRQEAASGLPDDGVDVGGLVPAGEPALVALAVGGDVLLVPELELLNGGLDDLVATIVPHRLGA

Sequence

>CNT30115740
AAGCCCAGCAAGAACTTTATATAAAGGTGATCACTAATAACAATGATGATAAAACCACATGTGGAAAGGAGGACGATGATCCACAGGATGGGACAAGTAC
CGTAGCACAAATGCAATTCACCAGATCGTCCGATCAATGGAGCAACCGGAGCGACACGGCGAGCTGGGGAGGACGATGACGAGGATGTCGTGGCGTCAAG
AAGCCGCTTCAGGGCTTCCAGATGATGGTGTTGATGTCGGCGGTCTCGTGCCTGCCGGTGAGCCGGCGCTCGTTGCCCTCGCCGTAGGCGGAGATGTGCT
CCTTGTGCCTGAGCTTGAGCTTCTCAATGGCGGACTTGATGATCTCGTAGCCACCATCGTTCCTCATCGACTTGGTGCTG