« Back to Oryza nivara search


Detailed information on CNT30115738


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 5e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690198Oryza nivaraOryza sativa61.3819.6581.22426forward
CNT30661857Oryza nivaraTriticum dicoccoides15.9936.1688.29111forward
CNT30149310Oryza nivaraBrachypodium distachyon21.4741.6283.89149forward
CNT30580303Oryza nivaraEchinochloa crusgalli38.6257.2685.07268forward

Expression of CNT30115738

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MVMPFYRKGWPSSIALLVSKVQTMAMRSHDLNHKLILRRYKGLRGHLQILQPPRQHVYHLCH*

>peptide 2 (40 aa)
MHHNATIASCLTISFSPCVVSMVSTRSCPLITLSYIHSGK*

>peptide 3 (31 aa)
MCMLQLTKNYFMICGLSISVTQAPNHGDAIL*

Sequence

>CNT30115738
AATTACATGAGTACATGGTGATATATCATATACCTGGTTGCACGGTTTAGTTTAATAATCAAACACTATATGTGCATGCTTCAGCTCACTAAAAACTATT
TTATGATATGTGGATTAAGCATATCTGTCACTCAGGCACCAAACCATGGTGATGCCATTTTATAGGAAAGGCTGGCCAAGCTCCATTGCTTTGCTGGTCT
CCAAAGTCCAAACCATGGCAATGCGGTCTCATGATCTAAATCACAAGTTGATTTTGAGACGATATAAAGGGCTTAGGGGGCACCTGCAGATTCTGCAACC
TCCCCGTCAACATGTTTACCACCTTTGTCATTGAGGGCCGGTTTTTTGGGTTCCACTGAATGCACCATAACGCTACAATAGCTAGCTGTCTCACCATTTC
TTTCTCGCCTTGTGTTGTCTCCATGGTAAGCACCAGGTCCTGCCCATTGATAACTCTCTCATATATCCACTCAGGAAAGTAGAACTCATTTTGGTTCTCA
ACGGTTGGGTCTGTGTTCCTCCTCCCACTCACCATTTCTAACACCAGCATGCCAAAGCTGTAGACATCCGACTTATATGAAATTGCTCCAAAATTCCGAG
AATATAGTTCTGGTGCAATATAGCCCATTGTGCCTCTTGCTGCAGTCAATGTGACAATGCTTTGATCTCTTGCACATAGCTTGGCAAGCCCAAA