Detailed information on CNT30115711


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001125, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694361Oryza nivaraOryza sativa58.4839.11891373forward
CNT30596363Oryza nivaraOryza meridionalis43.44100.4986.861020reverse complement
CNT30371142Oryza nivaraOryza glumipatula51.9690.5788.441220forward
CNT30109162Oryza nivaraOryza longistaminata58.8679.8488.131382forward
CNT30104116Oryza nivaraOryza rufipogon58.649.7590.921376forward

Expression of CNT30115711

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTKLMNIGKSWTAGKAYIYCSKVKMNLFE*

>peptide 2 (32 aa)
MTGVSQPVLSKNPGNARTPLAADNVTFRAHRD*

>peptide 3 (51 aa)
LEALPLSPPMADRRRRRSISPSVAPLPLSSHHRLRLHPASPFFPFPLSLHL*

>peptide 4 (84 aa)
MPAHGEPLPPLFRPSPSLPPPATTLTGCASSGNTCVRQRRNLSTTGAPAPNLSLLCVLGRKKKERRRRREKEREREKKKKRRTE*

>peptide 5 (35 aa)
MSVTESLVLGPDTATAGGKARRRRRLGESGELSED*

>peptide 6 (40 aa)
MWYLCTVVPFVSPRTRGNLMPSRASYDIYRGAGKYIDFRS*

>peptide 7 (93 aa)
MVSPCRRCSGHLPHYLHLPLPSPGARRPGTRVSASVATSRPPEHRRPTSLSSVFSAERRRKEEEDGRRREKEKRKRKGERSDSSVYFILDGNL*

Sequence

>CNT30115711
AGCTTGAAGCTCTTCCTCTCTCTCCTCCCATGGCCGATCGTCGACGCCGTCGGTCGATCTCCCCATCCGTAGCTCCTCTTCCCCTCTCCTCGCACCACCG
GCTTCGCCTCCATCCGGCGAGTCCATTTTTCCCCTTTCCCCTCTCCCTCCACCTCTAAGTCAAGTCACCACCACCATCATCCATGCCGGCTCATGGTGAG
CCCTTGCCGCCGCTGTTCCGGCCATCTCCCTCACTACCTCCACCTGCCACTACCCTCACCGGGTGCGCGTCGTCCGGGAACACGTGTGTCCGCCAGCGTC
GCAACCTCTCGACCACCGGAGCACCGGCGCCCAACCTCTCTCTCCTCTGTGTTCTCGGCAGAAAGAAGAAGGAAAGAAGAAGAAGACGGGAGAAGGAGAG
AGAAAGAGAAAAGAAAAAGAAAAGGAGAACGGAGTGACAGTAGTGTCTATTTTATTTTGGATGGCAACCTGTGATATTTCGAGGATTGGATAATAAGGTT
GCTTATCTCGGATTTATTTGCGTTGGAGCAAGGCAAGTTATTATTCCTCCCCTTGAGCATAATTACCCTATATTCTATATCTCTTTTCTATGCATTAGTC
ATTCATGATTTTGAATGCATAACCTGAACATATAGCAAACCAGATATGCTAGCTTTTGCTTAGCCCTGCCTAGTTAGACTGCATAAAAATATAATGAACC
TAGATTGGGACAGTACGTAAGATTTGGTTGATTTCTGGGTGGCTAGTACTGTCCCGGTCGATATAATTGCCACCAAATACTTATGTCAAACGAACGAGTA
CGACCGCAGCTTCTTGAATGGGGACAGACCTAGATATTATGTTAATTAGCAATGTGGTATCTCTGTACAGTGGTTCCTTTTGTAAGTCCTCGCACAAGAG
GTAATCTTATGCCGAGCAGGGCATCTTATGATATTTACCGAGGCGCAGGTAAATATATTGATTTTCGCTCATGAGCTGTGTGTGTGATTTTATGTAAACC
TGGTTGAGATGACGGGGGTCTCTCAACCAGTTCTCTCTAAAAACCCCGGGAACGCCAGAACTCCTCTCGCTGCTGATAACGTTACATTCAGAGCGCATAG
GGACTAGAGTTCATGGAACATGTGCCACAATTGTTAATAACCTAATAGTGGGCCATGACTAAGCTAATGAATATTGGCAAGTCGTGGACTGCGGGTAAAG
CGTACATTTACTGTAGTAAAGTGAAAATGAATCTATTCGAATAGCCGTGCTCACGGATTTGAGTATCTGGACTCATATAGTATTTGGTTAGAAACCTAAT
TCAAGATTTTATTAAATACTGATGCATTTCAAACATCATAGGCTTTCTTCTTCTACATTATCTGCTTTCTGCAAGTAAATCTAGTTCTACTCAAATACTG
CTATTTCATACATTCATATTGAATATAATAGCTTGCTGAGTACATTGTACTCACCCTTGCTTCAACCCCATCTTTTTCAGAGTCCATTTGGAGTTCTTAT
CGAGGCCGGGAGTTCAATCACATAAGTTAGTTCCCTTTTAACTTAATCTTCAAGTCTAGGTTATTTAGATGGTTTAAGTCTATAGTAAAACAGCAGAGTT
AGGTCATTCTAAAGCTTCTGCTGTAATAGTTAGCCACAATGTCGTAAATACCCTATTACTTTATGTAATAATATCTCCTTCAAAGCTATGTCTAAACGTA
TGCAAAGACGATCCAGATTGTTGAAGCTGTATCAACTTACTGATCCAGGGCTTGATACAGTCTAAACATGTCGGTTACCGAATCATTAGTTTTGGGACCC
GACACGGCGACGGCGGGGGGAAAGGCGCGGCGGCGACGGCGGCTGGGGGAGAGTGGGGAATTGAGTGAGGACTAGGGTTTGCAGTGTCTTGGGCTTGGGC
CATTTTGTTGTATTGGGCTTTTGGGCTGTGATGGAGTCTAGCTCGTTAAGGCTCGCGAGCCAGCTCGAGCTGGCTCGTTATCTCTAACGAGCTAAACTGC
CAGCTCGGCTCGTTAGAAAATTCAAACGAGCCGAGCCGAGCCTGTCACGAGCCGAGCGAGCTAACGAGCCACGAGCTTTCTGTCCACCCCTACCCATCTC
TCTACTCTATCCTCTAAGTGCCGGAGAGGAATAGGGTTGTTGCTTGGTCATCGCCTCCCGCACCGGTCATTGTTGCTCGCTGCTCGCCACCGCTGCCCAC
TTCCTAATGGACCCAAAGCTCGCTGCCCGCGGCTTCTTCGACCGCTACCATGGCGGGGGTAGAGGGGAGAGGAGGAAGCATTAATGACAAAAGATTGCTG
ACCATGCCGCCTGGATCCACTTGCCAGCCTTAAAGCTCGTCGCCTGCA