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Detailed information on CNT30115707


BLAST search results

BLAST vs Swiss-Prot:
sp|P07924|RT13_WHEAT, E-value = 7e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690827Oryza nivaraOryza sativa63.310099.892758forward
CNT30523471Oryza nivaraSetaria italica12.334.6393.84536forward
CNT30549210Oryza nivaraIpomoea triloba15.6357.6184.14681forward
CNT3098190Oryza nivaraSolanum tuberosum542.0889.91218forward
CNT30187493Oryza nivaraSecale cereale10.3399.1298.67450forward
CNT30220010Oryza nivaraHordeum vulgare18.3829.9296801forward
CNT30401101Oryza nivaraTriticum turgidum26.4994.8296.791154forward
CNT30592607Oryza nivaraMusa acuminata4.849.2984.69209forward
CNT30554385Oryza nivaraOryza glaberrima2.9456.6499.22128forward
CNT30437037Oryza nivaraAegilops tauschii7.9410097.98346forward
CNT30664530Oryza nivaraTriticum dicoccoides8.2210099.44358forward
CNT30598800Oryza nivaraFraxinus excelsior8.5410093.55372forward
CNT30228621Oryza nivaraAnanas comosus7.0774.0497.08308reverse complement
CNT30207841Oryza nivaraHelianthus annuus14.0722.8889.56613forward
CNT30687453Oryza nivaraTriticum urartu66.2453.9795.292886forward
CNT30480890Oryza nivaraArabidopsis halleri7.4697.692.62325forward
CNT30354619Oryza nivaraLactuca sativa9.3624.4993.87408forward
CNT3056169Oryza nivaraAmborella trichopoda8.3199.4588.95362forward
CNT30103479Oryza nivaraOryza rufipogon19.2356.7100838forward
CNT30577864Oryza nivaraOryza barthii2.7121.15100118reverse complement
CNT30495778Oryza nivaraDigitaria exilis8.6590.1997.88377forward
CNT30175599Oryza nivaraVigna angularis14.7839.982.61644reverse complement
CNT30557320Oryza nivaraPanicum hallii10.1910098.65444forward
CNT30335348Oryza nivaraCynara cardunculus8.1998.6291.88357forward

Expression of CNT30115707

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTYLIRLKLMSKTRSFTSISAGRKGAEATV*

>peptide 2 (34 aa)
MRCSKGEANASLATRESSKSESIHLLANTGSSKI*

>peptide 3 (61 aa)
MLGIFYWPFWISLKGLKTFLYTDRSREAGKKETTGMKSAPGTHGNRTHWRSFNRASSTKSS*

>peptide 4 (60 aa)
MAFFGPIPSIFVEAILTCSSGSDLAPEIYDILYPSLFLVFSAGIYNGLQVLMMSEWGLLN*

>peptide 5 (39 aa)
MVPQDPINLLRSTLPRYCSMEAGGLLFSFRSSARFFLYF*

>peptide 6 (90 aa)
MNRTSTSSVTPTALTALYPNPTCSGPGSSRISSSVSGPWKLGGIRLGLIENSISFLSLLTPKKNIVEVRSRRRHLYLILRLRRPAPQKFC*

>peptide 7 (35 aa)
MARTQSRRKSVPREAGEVGTRSRRSRGSGCGLRCG*

Sequence

>CNT30115707
TTGCTAAACACAAATCCTTCTTTTCTTGTATAGACGAAATACAAATAAGAACTAAGTAGGTTTCGACCCATTAAAGGAGTCAATGGCACGCACACAAAGC
AGGAGGAAATCGGTACCCCGCGAGGCTGGCGAAGTCGGCACAAGAAGTAGGCGGAGTAGAGGCAGCGGTTGCGGGCTCAGGTGCGGCTAAATCTAAATCA
ATATTCCGGGTTGGCGGAGTTGGTAGAAAGCACGGTTGGCGATAAGCTGGTACTAGTTTCATTCTTTCTATTCAAAAATCCAATACCCGGAACTGGTAAA
TCAAACAATGTAGGCACACGTTGGCACAGTTCTGTAAATAATAGATGTCTCATCCGGTTGAGCTGTCGCAATCAGTCTTTCTCTTCCTTTCTTAGTAGCA
GATCCAACATGACTGTATTAAACCTTAAGCAATCAGGGTTAAGCTAGCTCATTGCCTGAAAGTGGAGCTCGTATTATACACCTTNAAACCAGCATAGTCT
ATGAATTAGCATGAACAGTTTATTGAACTTGGTTGCACTCGTAAAGCGAGCGTGAAGAGAGCAGCGAAAGAAGCCCACGGAACGGAGCGGTTATTTTTCC
TGACTAGCAAGTGGACAGGCTCAGATGGCGTAGCTGATGTGTCATGCTAGGTATCTTTTATTGGCCATTTTGGATTTCTCTCAAGGGATTGAAGACTTTC
CTCTATACTGACAGAAGCAGAGAGGCTGGTAAAAAAGAAACTACTGGAATGAAATCAGCTCCGGGAACACATGGTAATAGAACCCACTGGAGATCATTCA
ATCGGGCGTCTTCCACAAAGTCAAGCTAGAGTAAGTGGCGTAAGATAAGATAGATGTTCACTTTCATCGACCAATGTACCTGAAATTCCTATACGTAAAG
TCGAGAGCTAGAGAGAGTAAATGAGATGTTCAAAGGGTGAAGCTAACGCTTCCCTGGCCACTAGGGAGTCATCAAAGTCTGAGTCCATACACTTGCTAGC
TAATACTGGATCGTCAAAGATCTGATTATATTTCATAATACCTTCTGTCTCTCTCCTAAGGGATCCAATCAGAAGGAATTCCCTCACTTCGCTCATGATA
GTCGCTCGAGTTCCCTTTTCCTTTTTAGTTGAGTTTCGCCTCTCCTCCTTTCCTTGTCTCCATTCTGATTGATTCGTTTCTTCGCGCAAGCACTTGGTTC
GCCCCTTACTATAACCATCCCACTCAATCTTTTACACCGATGTTTCGTACTCTCTCGACCAGGTCATCATAAGAAAATACTGCCAAATCTTTCCGAAATG
AGAGAAGGAGGGAAGGCGCGCTACAACTAACTGCTGAAAAACGCAAGATTAGCGCTAAGAAGCAACCCTAGTTTAAGTACTAGCGTCCCACCCCAACGTT
CTTGTACTTAAAAAGACTCTCCCCGCTTGCTGCTCGCCTCAGCCAGACGTGGCTTATGTAGTGGTCGGCATTCCTACGTGCTCCGACTGATCCCCACAGG
AGATTATGTGAGGGGTCTTGGAAACTGTCGTGACGCTTTGGTGACGAAGGTCACCGGGGTGACTATGGAAGGATTCCGTGGTAGTCTCTGACTCCCTCCA
ACTCAATCAATATCAAGAACATGTCGTGAGCATGGGGTTTGGTTAGGCTTGGTTGAGTTTTGTAAGAAAAGATAGTAGGTTGAGGGGCTTCATTGATTAG
TAAACCTACGGTGCTGGTAAGGTCGGGACCGTGGTCGTCCGTCTCCGCTTTGCCGGCCGATAAGATCACTGAGATTGACCAGCCAGCTGGGTAGGTTTGG
CTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCGCGAGTCACCTTCCTTAGGCTCCGAGTCACCTTCTTCTAAGCTCCGCTGGACGACACGGCATTC
TCGTTCTATAGGCCGGCCGTACTTGTGATGGTTCCCCAGGATCCAATAAATCTACTTAGGTCTACGTTGCCGCGATATTGTTCTATGGAAGCGGGTGGGC
TGCTTTTTAGTTTTAGAAGTTCGGCCCGGTTTTTCCTTTATTTTTAAAGGGGGACCTTTCTAACGCATATTCTGTCGTACCGGCATGGCCCCACTGATTT
GTTTTCGATCGGAGCATCAAGCAGCGCAACCCGGTTCTACTTGACTAAGCCCCGTGCTCGCCCAAGGAGGGAGTTTGCTTTACCCAACTCCCCTTTTTGA
TAACAAGGCAAAAACCTCCGACCCGACATTCATGAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCCTCTTTTTTTTCCCTAAATCTTGGATTTGGAAG
TTGGTAAAGACCCACCCCTTGTTTAAGTCAGAATGAGTCCCCGAGACATTGGCTTCCGCCAACAGTGAACTATTAAGGATCGCATCCCGCGCATATTCCA
CATTATAGCCAGCAACTGATTCAGCTTCCGCTTCTGGGAGATCAGACGGAGCTCGATTAGTTTCTGCTAGACAAGGAATAAAGAACATAACCAATACGGG
GAACAAGGGAATACCGGACCATATCTGCTTTTGCGCCATGACAATCTCACTCGAATTACAGGGACCTACACATATTAGTACAGTAATAAGAATAAGACCA
ATAGAGACTTCATAAGGGACCATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGACGTTCCCAACAATCCACGAGAATAT
CATACCCAACTATGAACCGTACGAGCACATCCTCTGTCACCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCTCTGGCCCTGGGTCCTCCCG
CATCTCTTCCTCGGTAAGCGGACCGTGGAAGCTGGGGGGTATCCGCTTGGGACTGATAGAAAACAGCATATCTTTTTTGTCCCTCCTGACCCCTAAAAAA
AATATAGTTGAAGTCCGGTCGCGTCGGAGACATCTTTATCTGATTTTGAGGCTTCGTCGTCCGGCTCCTCAAAAATTCTGTTAGGATCGGCTGGCTCATC
CGAAAAGAAAACAGAGACAAAACGGATTTGTTTCAATGACATATCTAATCAGACTGAAATTGATGTCGAAGACACGATCATTCACATCAATTTCAGCAGG
CAGGAAGGGCGCGGAAGCTACCGTTTAACGAATGCAAGCAAGGTAGCTTGCTTACTCTCCATCTAGCGCGCGTTGGCGGCAAGGAAGGAGGCATTGGAAA
GACTAGACCATACACATTAATTAGTACAAGAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTAACAAAGGCCGACTACTACATAGAGAC
AACTACCAGTCATGAGCGATAGTGAAGCCGTCAGAGGCAGAAGCTGTCGCTTGACGGACGAAGCCGAGCCGATACGATAGGCGGGCGAAGTGAGCGAGAC
CAAGACGGGCCAGACGTGGGGGGCCTACTATACGTATACGTGATTAGTAAGTGGTTCAAGACATCGAAGTGAACTATTGAACAGTGATCAGACAAGTACC
AAGGAGCAAGAAAACGTATGCGCAGGCGCAAGGGATGAGCGCGAAATCCGTTGCTTGTTCTTTCGGTAGCCTTCTTTCATTTCCGAATTAGCTTGCGAGC
AGTCCTTGCATTAGTATGAGTTCGTTGACCGCGTAAGGGCGATCCATCTTGATGACGAATTCCACGATAACGAGAAATAGAAATTAATCGTTCGATGTCT
GCTCGTTCTCCCCTCTTCAATTCCCAATGAACAACATGATCTTGAGCTATCATTTGTTCAATTTGGTCGATCTGATACTTAGTTAACTCATTCATCTTGA
TGTTCCCACTGATACCTAATCGATAACGAAGCTGAATGGCTTTTTTCGGTCCAATTCCATCCATTTTTGTTGAGGCAATTCTGACTTGTTCATCGGGAAG
TGATCTAGCTCCTGAGATATATGACATTCTTTATCCTTCTCTTTTCCTGGTCTTCTCGGCTGGAATCTACAATGGACTACAGGTCCTTATGATGAGTGAG
TGGGGGTTGCTCAATTGACTACACTATTGGTGCACTCTATGCTATCTCCTTTATGAGTTTCTTCCTTTCTGAAAGTCACCACAGTGGAGAGTTACTATCG
ACTTTCTCCATGTGCCACTTCTATATGGGAATGTGCTAGTAAGGAAAGCCGACGTTGAAGAAAGACAAGAACTACCCACCCTATTGACTAGTAAGGAAGC
AAGTCCCTATATAAGAGTTAAGCAATGACCGAAAGCAATTAACGTGCCAATAAGAGTTCCCCGACACGAACCATAAAATAGAAATACACTACTCCAGCAA
ATACAACTACGGAACTAGATAATCCTTTCTGAATGTTCTATAAACAATATCCTCTGG