Detailed information on CNT30115706


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 3e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695317Oryza nivaraOryza sativa80.5426.496.67240forward
CNT3067785Oryza nivaraLeersia perrieri37.929.2286.73113forward
CNT30596657Oryza nivaraOryza meridionalis40.622.1685.12121forward
CNT30369441Oryza nivaraOryza glumipatula94.6343.7998.94282forward
CNT30107513Oryza nivaraOryza longistaminata10046.1395.97298forward
CNT3099965Oryza nivaraOryza rufipogon10044.0897.32298forward
CNT30574763Oryza nivaraOryza barthii99.6632.9697.64297forward

Expression of CNT30115706

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MISCSLALARLVCPSGVVAPPVLSFAYEL*

>peptide 2 (46 aa)
DSENLEYVEQDSEVECVSTQQQGEDSGYELCFLCGHCSAEGGEGNE*

>peptide 3 (32 aa)
MSYASCVVIALLRVARAMNDFLQLGSCPVGLP*

Sequence

>CNT30115706
AGATTCGGAGAATTTAGAGTACGTGGAGCAAGACTCTGAGGTTGAGTGTGTTTCCACGCAGCAGCAAGGAGAGGATTCCGGTTATGAGTTATGCTTCTTG
TGTGGTCATTGCTCTGCTGAGGGTGGCGAGGGCAATGAATGATTTCTTGCAGCTTGGCTCTTGCCCGGTTGGTTTGCCCTAGTGGGGTTGTGGCACCACC
GGTTTTATCTTTTGCCTATGAACTCTAATTGAGACTTCCGCTGCTATATTTATGTGTTGTATGTTGGGATCTCGGACCCTATTATGTGTCATGTACCT