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Detailed information on CNT30115704


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Oryza nivaraOryza sativa59.4763.4198.51201forward
CNT30536141Oryza nivaraEucalyptus grandis25.7423.9782.7687forward
CNT3044269Oryza nivaraPrunus dulcis25.7414.5783.9187forward
CNT30230907Oryza nivaraAnanas comosus26.6330.394.4490forward
CNT30720826Oryza nivaraTriticum spelta23.6713.4287.580forward
CNT30597158Oryza nivaraOryza meridionalis36.3917.9397.56123forward
CNT30371509Oryza nivaraOryza glumipatula35.2120.5597.48119forward
CNT30105031Oryza nivaraOryza longistaminata30.7713.4997.12104forward
CNT30318742Oryza nivaraAsparagus officinalis25.1513.7190.5985forward
CNT30149302Oryza nivaraBrachypodium distachyon35.820.2391.74121forward

Expression of CNT30115704

Peptides detected in this lncRNA

>peptide 1 (39 aa)
YNDFFITQNPRQSHIVDIDQGSKTLMETFSMIKQQAVFR*

>peptide 2 (32 aa)
MALRSLSSLSLVTTTLEGWMPTLTVEPFTFSLV

Sequence

>CNT30115704
CTTATAATGATTTCTTCATAACTCAGAATCCCAGACAGAGCCACATCGTAGATATAGATCAAGGATCCAAAACTCTCATGGAGACATTTTCAATGATAAA
GCAGCAAGCAGTGTTCAGGTAGCATGAACTCCTAAAAGAAGCAGTTGATAGCGAAACAAAAGCTAGATAAGGAGGGGGAGGAACAGTACGAGCACCAGCA
GATCCGACCCACGAACCTAATCGATCTCCTGGAGCGAGGATGGCCTTGCGGTCCTTGTCGAGCTTGAGCTTGGTGACGACGACCTTGGAGGGGTGGATGC
CGACGTTGACGGTGGAGCCGTTCACCTTCTCCCTGGTG