Detailed information on CNT30115703


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007020, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693123Oryza nivaraOryza sativa75.7850.6585.971283forward
CNT30596548Oryza nivaraOryza meridionalis68.6463.8185.971162reverse complement
CNT30107694Oryza nivaraOryza longistaminata68.7578.1296.561164forward
CNT30102444Oryza nivaraOryza rufipogon69.2961.0689.941173forward
CNT30574591Oryza nivaraOryza barthii53.2868.5997.67902forward

Expression of CNT30115703

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVDFRVASTVPIDIKLPSTCEEHTSTTAILVWA*

>peptide 2 (86 aa)
RAPRALSLLLCLATTGHCRSPSPECFWPSPCAIGFASTRRTHFPSFPFLSPSETNHHSHLLLLPEQALAVAVPVSSLTLSTGNHPP*

>peptide 3 (43 aa)
SSSSSLSPVMSSHHRPLPISLTGVFLAKPLRHRVCLDEANSFS*

>peptide 4 (37 aa)
MEQVPLMLVTEKLCHDKANVFGTSWIAGKAYIYCSKV*

>peptide 5 (32 aa)
MTGVSQPVLSKNLGNARIPLAADNATFRAHGD*

Sequence

>CNT30115703
CGAGCTCCTCGAGCTCTCTCTCTCCTGTTATGTCTAGCCACCACCGGCCACTGCCGATCTCCCTCACCGGAGTGTTTCTGGCCAAGCCCTTGCGCCATCG
GGTTTGCCTCGACGAGGCGAACTCATTTTCCTAGTTTCCCCTTCCTTTCCCCTTCCGAAACCAACCATCACAGCCATCTCCTCTTGTTGCCGGAGCAAGC
TCTTGCCGTCGCCGTTCCGGTTTCCTCCCTAACCCTCTCTACCGGAAACCACCCTCCCTGAGTGCGCGTTGCTCGGGAACGCGTGTTGCCGCCGGCGTCA
CAGTCTTCTATCCACCGGAGAGCCGGCGCCCCTCCTCTCCCTTCTCTCTGTTTGTTCGTGGAGAAAGAGAGAAGAAGCAGGAAAGAAGAAGAAGAAAAAG
AGAGAAAAAGAAAAAGTCTGACAGAGTCTGTTATATTTTGGATGGAAACCTGTGGTATTTCAAGGATCGGATAATCAGGTTGCCTATCTCGGATTTATTT
GCGTTGGAGCAAGGCAATTTATTATTCCTCTCCTTTGAGCATAATAATCCTATATTCTATATCTCCAGTATCTTGTGCATTAGCCATACATGATTTTGAA
TGCATAACCTGAATATATAGCAAACCAGATATATGAGAGATTTTGCTTAGCCATGCCTAGTTAGATTGCATAAAATATAATAAACTTAGATTGGAACAGT
ACTGTAGAAATGGTTGATTTCCGGGTGGCTAGTACTGTTCCAATCGACATAAAATTGCCAAGTACATGTGAAGAACATACGAGTACGACCGCAATTCTCG
TATGGGCATAGACCTAGTTGATTAAGTTATCTAGCAAAGGTGGTACCTTTGTATAGTGTTTCTTCTTAAGTCCTCGCGCAGGAAGCAAACTTACGCCGAG
CAGGGCGATTGCAATATTTACCGAGGCGCAGGTAAATATTTGAGATAAATTGTGATATCACAAACTGTGTGTGTATTGTGAAAACCTGGTTGAGATGACG
GGGGTCTCTCAACCAGTTCTCTCCAAAAACCTTGGGAACGCCAGAATTCCTCTCGCTGCTGATAACGCTACGTTCAGAGCGCATGGGGACTAGAGTTCAT
GGAACAGGTACCACTGATGTTAGTAACCGAAAAGCTTTGCCATGACAAGGCTAATGTGTTTGGCACGTCATGGATTGCGGGTAAAGCGTACATTTACTGC
AGTAAAGTATAAATGAATCTATTCGAATAGCCGTGCTCACGGATTTGAGCATTGGGACTCATATGGTATTTGGTTAGAAACTTAATTCCAAACTTTATTA
AATATTGTTGCATTTAAAACATTCTAGGCTTTATTTCTCTATATTCTTTGCTTTCTGCAAGTAAACCTAGATCTACTCAGATATTACCATTTCATGCATT
CATTATTGAATATAATAGCTTGCTGAGTACGTTGTACTCACCCTTGCTTCAACCCCCTTTTTCAGAGTCCAATTGATGTTCTTACCGAAGCTGGGAGTTC
AATCATATAAGTTAGTTCCATTCTAACTTAATCCTCAAGTATAGACTAGATAAATGGTTTAAGTCTATAGCAAAATAGTAGAGTTGAGTCATTCTTCTGT
TGTATTAATTAGCCACAAATTTGTAAACACCCATAAATATTTTGTAATAACATATCCTTCGGAGTCATGTTTAAATGTATGCAATGAGGATCC