Detailed information on CNT30115695


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006661, E-value = 3e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690295Oryza nivaraOryza sativa85.6196.0598.67827forward
CNT30595467Oryza nivaraOryza meridionalis41.9338.587.16405forward
CNT30100056Oryza nivaraOryza rufipogon99.5991.198.96962forward
CNT30575058Oryza nivaraOryza barthii81.3795.9798.09786forward

Expression of CNT30115695

Peptides detected in this lncRNA

>peptide 1 (43 aa)
HCPPLSRRNPGRELQLSLSTSLSSSAAEKGDAADRQRVVSIPI*

>peptide 2 (59 aa)
SLSTPKPKKPRERAPTLPLHLSFVVGRRKGGRRRSPTSRLHPYLIHVLLSSLHAEQILF*

>peptide 3 (71 aa)
MAQQVRRSATVFFTSGCRRHCRFRLLRSSSSRSSRRRSPAEGRRRREDARAVAVTKTLEKFNLTRGFRFSL*

>peptide 4 (67 aa)
MLSKSSFDSILFRPLQRRERDLVYGSSGARSKRRRSQHRRRSDRCRPSQAEPSRQRLLLEVLLKTPQ*

Sequence

>CNT30115695
TTCACTGTCCACCCCTAAGCCGAAGAAACCCAGGGAGAGAGCTCCAACTCTCCCTCTCCACCTCTCTTTCGTCGTCGGCCGCCGAAAAGGGGGACGCCGC
CGATCGCCAACGAGTCGTCTCCATCCCTATCTGATTCACGTTCTATTATCTTCTCTCCATGCTGAGCAAATCCTCTTTTGACTCCATCTTGTTTCGTCCA
CTGCAGCGACGGGAACGCGACCTCGTCTACGGGAGCTCTGGAGCGCGCTCCAAGCGCCGCCGCAGCCAACATCGTCGCCGTTCCGACCGCTGTAGACCGA
GCCAAGCCGAGCCGTCACGCCAACGCCTTCTCCTTGAAGTCCTCCTCAAAACCCCTCAATAATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCAC
CGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGCAGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGC
CGTCGCCGGGAGGATGCGCGAGCCGTTGCTGTCACCAAGACCCTGGAAAAGTTCAACCTAACCCGCGGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAA
TCGACTGCTTCTTCTAGGACTTGAACTTAATGGGGTAAACCCCTAGTCGGTGTGCTTGTGGATTGGGTAGATAAGCTTCCGTTGTTCTCTCATGTGTCTA
TTTGGCCGGTCAGCCTATGTAATTATTAAGTTGTTGTAAGTCTTAAGTTTCTTTCATCTTAGTTGTGTTTGCTATGTATAATCATGCTTAAGATGAAAGT
GTGGATCTAGTGCACATCCTAGGAATTCACATGAGTATGAGTTAGGAATATTTGAGAGGTTGTAGATCTTTAGCCATTTTGTCAAGTCTAAATCTCCTGA
ATGTGTAACACATCTGGTCGCCACCTTCAAGTGGTTTGACGGGCACATCTCAGGCTGAAGTTAACT