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Detailed information on CNT30115666


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690231Oryza nivaraOryza sativa34.4316.1593.09188forward
CNT30574736Oryza nivaraOryza barthii29.6714.5291.36162forward

Expression of CNT30115666

Peptides detected in this lncRNA

>peptide 1 (88 aa)
VGSNMNGVDVKSVPSLLIHSLQAISPARWLVGCRSRLPLSSAAARSPCPPHRPEPNRIFLYPPPPPRSPWSTSSPSTTTTTHLAGSPG*

>peptide 2 (87 aa)
MLKVFPPSSSTASKRFPRRAGWLVAGAASHSPPPPRAHRVPHTGRSRTASSSILLLLPGLLGPRRRLQPPPPPISRDLRGEVEDRMG*

Sequence

>CNT30115666
GTTGGATCCAATATGAACGGTGTAGATGTTAAAAGTGTTCCCTCCCTCCTCATCCACAGCCTCCAAGCGATTTCCCCGGCGCGCTGGCTGGTTGGTTGCC
GGAGCCGCCTCCCACTCTCCTCCGCCGCCGCGCGCTCACCGTGTCCCCCACACCGGCCGGAGCCGAACCGCATCTTCCTCTATCCTCCTCCTCCTCCCCG
GTCTCCTTGGTCCACGTCGTCGCCTTCAACCACCACCACCACCCATCTCGCGGGATCTCCGGGGTGAGGTGGAGGATAGGATGGGATGAGGTCTTCGGTC
GGTCTTCCCGCGATGCTGATGCTGGCTGCTGCTTTTCGATAGGCATTGACTACGATTCTGGTTCATAAATTGGACAGGGACTTCAGAGAACTTCACAGGG
GGAGCACCACAGAATAAATCATGGTGGAGATAAATGAGTAGAGTAAATCGCAGCAACAGCAGAATAAGGTAACCACGACAACTGAACCACAAATATCCAA
TTCTCTCATTGAATGTTTATACAGTGAAGGGTGGGAATGCATACTT