CANTATAdb - search

Detailed information on CNT30115639

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690487	Oryza nivara	Oryza sativa	39.98	52.6	90.54	465	forward
CNT30552106	Oryza nivara	Oryza glaberrima	35.77	38.38	93.27	416	forward
CNT30109319	Oryza nivara	Oryza longistaminata	7.31	23.42	90.59	85	forward
CNT3099524	Oryza nivara	Oryza rufipogon	27.77	17.37	94.74	323	forward

Expression of CNT30115639

Peptides detected in this lncRNA

>peptide 1 (94 aa)
TSPRPSLVSGCKPYGIPFPPSLATNPSPSPAIPPTPGRLCFPGDVSALRSVVNARCPGYASPSPCVLVRPEPQIQAPSGMPRRAAGLTELGEAS*

>peptide 2 (30 aa)
MRSALCHQGSLLYNSQLRLSLGGSVLKMSF*

>peptide 3 (44 aa)
MLSGRGIGMEPFETILQSKGSTYMYSRANTKYEKCFVSPRIIAV*

Sequence

>CNT30115639
TACTAGCCCTAGGCCGAGCTTAGTTTCTGGTTGCAAACCGTACGGAATCCCCTTTCCTCCCTCTCTTGCCACGAACCCTTCGCCGTCGCCGGCGATCCCA
CCGACTCCCGGCCGCCTCTGCTTCCCCGGCGATGTCTCTGCTTTGCGCTCCGTCGTCAATGCGCGTTGCCCGGGCTATGCGTCGCCTTCTCCCTGCGTCC
TTGTGAGACCCGAGCCGCAAATCCAGGCCCCAAGCGGGATGCCACGCCGAGCCGCAGGATTGACAGAACTCGGGGAGGCCTCCTGATCCGGTGGTTGTTC
GGTTCGCTGCCCCCTCCTTGCATTGATAAAGGATTTTGTTGCAAACCACTAGTTATGGACCCATGAAACGGACGAGGAGGGCATCTTACTGAAATAGTGC
AACGAGGAGTACTCTGCACACGGTGGTTGGATGGAGATATATCATAGCAACAACTGAACAAGGTTGGACCATAGATGTTGAGTGGGCGAGGTATTGGAAT
GGAGCCTTTTGAGACGATCCTGCAGTCCAAGGGAAGCACATACATGTATAGCCGAGCAAACACCAAATATGAGAAGTGCTTTGTGTCACCAAGGATCATT
GCTGTATAATTCACAGCTAAGATTGTCATTAGGCGGTAGCGTGTTGAAGATGAGCTTCTGAAGAGGGCACGGAGACCGGAGAGGCGGTGAGGGAACCGGA
TCTCTGGTCCACCGTCGCTGCACTGGGACACTCTACAATATCCGAAGAAGTCCTGGTCACGCCAGGCGGAAGCTGTGGCCCTGCTGTAGCTGTAGGCGCA
ATGGCTGAGAAGAGTGAGCAGAAGAGAGATGGCGAGGAATTTACTCATATTATCTCTGTGCGCTACGCTACAAAGGCCTGATATATCGAGATGAAGGCAA
GCAAGCTGGCAAATATTGCAACTGCGCGTTATCACTGTATGTAAATATATGAACTTCAGATGGAGAAGCGCAGATTAATCGATATTGCAACGAACTGTGT
GCTTCATTGTAAGTAACAAGGTGCTACTTTTCTCAAAAGAAAATGTACTGCCACTTTGGTAAATTGTGGTGGACTGACTTGGAGCTTCGTAGACTTTCTG
CAGTGCACTCACGTCCAGTCTAATGATCAATTAATAAAATTACAGTACAAAAAGAAGAAGACG