Detailed information on CNT30115624


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000696, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689928Oryza nivaraOryza sativa59.5758.6799.27274forward
CNT30552031Oryza nivaraOryza glaberrima59.5758.05100274forward
CNT3099732Oryza nivaraOryza rufipogon59.5756.1599.27274forward
CNT30574923Oryza nivaraOryza barthii59.5749.37100274forward

Expression of CNT30115624

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MKLFVSCGLMLASYFTAFTFTRPPPCLQETMGDPSFFSLFSFTNQIKTWIKVI*

>peptide 2 (39 aa)
MTNLWVADETFCQLRIDASILLHCFHLYKTTTLLARNHG*

Sequence

>CNT30115624
GTGGATTTACATTGGAGTTGCATTTTATTCAGGCATGAGGGGGGAAAAATGGCAGTTAAATTAGTTACAGGTTGATAGGAAATGGAGAGATTATTACAGG
CCAAAGAGATCTTATTAATCTGGCCTGTTTTACAGTTTATTTTTTTTCTTTGATGACAAATTTATGGGTGGCTGATGAAACTTTTTGTCAGTTGCGGATT
GATGCTAGCATCTTACTTCACTGCTTTCACCTTTACAAGACCACCACCTTGCTTGCAAGAAACCATGGGTGATCCTTCTTTCTTTTCTCTTTTTTCTTTC
ACCAATCAGATCAAAACCTGGATCAAAGTTATCTAACTCTTCAGGAAATAAGGTCATTTTCATAGTCGGCAGATTTGCAGTATCTCTAACGAATTCGCAT
CAGATTGGATGCACATCTTATGCTGAATCCCTTTACTCTCTTGTGTCCTAACAAGGTTTT