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Detailed information on CNT30115617


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000447, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099563Oryza nivaraOryza rufipogon61.5260.0997.68259forward

Expression of CNT30115617

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MPPPPCLDRVLQFLEVPHPPCLHQVLQFLEVPHPPCLHQVLRFLEVPHPPCLHQVQ*

>peptide 2 (61 aa)
PSLTGSAIPGGTKFSIPFSGSEIPPGATSSMPLPGSAVPKGITSMSSSGSLIVGDATSSMP*

>peptide 3 (65 aa)
MPSSGSTIFGGAASSMPSSGSTIFGGATSSMPTSGSIITGGAPTLPGSILAGDVTPMPPASSCLNG

Sequence

>CNT30115617
GCCATCTTTGACAGGTTCTGCAATTCCTGGTGGCACCAAATTCTCCATACCTTTCTCAGGTTCTGAAATTCCTCCAGGTGCCACCTCCTCCATGCCTTTG
CCAGGTTCTGCAGTTCCTAAAGGCATCACCTCAATGTCTTCATCAGGTTCTTTGATTGTTGGAGATGCCACCTCCTCCATGCCTTGATCGGGTTCTACAA
TTTTTGGAGGTGCCACATCCTCCATGCCTTCATCAGGTTCTACAATTTTTGGAGGTGCCGCATCCTCCATGCCTTCATCAGGTTCTACGATTTTTGGAGG
TGCCACATCCTCCATGCCTACATCAGGTTCAATAATTACTGGAGGTGCCCCCACATTACCAGGTTCTATACTAGCTGGAGATGTCACGCCAATGCCACCA
GCTAGCTCCTGTCTCAATGGT