Detailed information on CNT30115596


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672983Oryza nivaraSetaria viridis51.6323.9785.59111forward
CNT30520857Oryza nivaraSetaria italica51.6311.7685.59111forward
CNT30292293Oryza nivaraTriticum aestivum41.436.4888.7689forward
CNT30390478Oryza nivaraTriticum turgidum41.47.4788.7689forward
CNT30555733Oryza nivaraOryza glaberrima59.539100128forward
CNT30249784Oryza nivaraAvena sativa39.0710.2386.984forward
CNT3014188Oryza nivaraZea mays21.866.1593.6247forward
CNT30597198Oryza nivaraOryza meridionalis59.539.55100128forward
CNT30582613Oryza nivaraEchinochloa crusgalli58.1425.5187.2125forward
CNT30551919Oryza nivaraOryza brachyantha51.167.0688.18110forward

Expression of CNT30115596

Peptides detected in this lncRNA

>peptide 1 (38 aa)
DWMALTVKRGLLVSEAPDSPLGLEHTKLLFISWLAMGA*

>peptide 2 (70 aa)
RLDGLDCEAGPPCQRSTRQPPRLGAHQAALHQLARHGSISSGHLSPLVSSFLSLARCSLSRPKKMDVKQPS

Sequence

>CNT30115596
AGACTGGATGGCCTTGACTGTGAAGCGGGGCCTCCTTGTCAGCGAAGCACCAGACAGCCCCCTCGGCTTGGAGCACACCAAGCTGCTCTTCATCAGCTGG
CTCGCCATGGGAGCATAAGCAGTGGCCATCTCTCTCCTCTCGTCTCTTCCTTTCTCTCCCTAGCTAGATGCTCTCTCTCCCGGCCAAAAAAAATGGATGT
GAAACAGCCTTCTTG