« Back to Oryza nivara search


Detailed information on CNT30115582


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690337Oryza nivaraOryza sativa66.7325.8896.29377forward
CNT30110739Oryza nivaraOryza longistaminata16.4622.1484.9593forward

Expression of CNT30115582

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSSGSSELFVLRRVKVVPDSCRYRSLGYTLSTCK*

>peptide 2 (49 aa)
DSYVCQLLCCLVSKRGYMIEVDLVLHQVQCEVALPSSNCSLVLFQSETN*

Sequence

>CNT30115582
GATTCATACGTTTGTCAACTTCTATGCTGTTTAGTTTCTAAAAGAGGGTACATGATTGAAGTGGACCTTGTGCTGCATCAAGTGCAATGTGAAGTCGCTC
TTCCCAGCTCAAACTGTAGTCTTGTCCTGTTTCAAAGTGAAACAAATTGACACTCATAAATACCATTGGGCATGCTACATATTCAGGTTATCCAATACAA
GCTATCCAAATTTCAATGGTGTTGAACTGCTGCATTTGGAAACATGAATTACAAGACTTGCTTACTGATATTCTTACACTAGGATGATCCTGGGATTCTG
TTTGCCATCATAGTAGTTGCATTTCACACCTTCCCAGGTTTGCCATCGATGGTGTTAGTGGTGAGGTTTTCCATCCGAACAAGCGAGTAAGCCTCAAAGG
CGTTGATGAGCAGTGGGAGCTCCGAGCTGTTTGTCTTACGCAGGGTGAAAGTTGTACCTGACTCATGTAGGTACCGGTCCCTCGGGTACACGCTATCCAC
CTGCAAGTAGGACGGTGAGAAGGCCTGGTGCAGCTGGTCGCCATCACTGTAGATTTGGAACATCC