Detailed information on CNT30115578


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552241Oryza nivaraOryza glaberrima20.2916.54100111reverse complement
CNT30595547Oryza nivaraOryza meridionalis17.1827.0910094forward
CNT30369259Oryza nivaraOryza glumipatula47.5338.0198.46260forward
CNT3099836Oryza nivaraOryza rufipogon47.7156.8691.57261forward
CNT30574722Oryza nivaraOryza barthii47.7142.1689.27261forward

Expression of CNT30115578

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MDGVVVGRTTARWREREPSDHSIGRLMALRSSPSLLCFGATRLGLVS

>peptide 2 (48 aa)
MDGWRRRRSDDGEVERARAIGSLDRTADGAPLLSFSTLLRCDATWACEL

>peptide 3 (41 aa)
MPPPPADPPPGDDASSSSFRCTRRRSGVRRGAVAGREVMSS*

>peptide 4 (35 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAGRSAARR*

Sequence

>CNT30115578
GTAATGTTTAAAATGATTCAACACAAATTTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACT
CGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAACAAGAAGAACGAAACACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCA
CGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCG
TCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTCGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAGATATAT
ATGGATGGATGGCGTCGTCGTCGGTCGGACGACGGCGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGATGGCGCTCCGCTCCTCT
CCTTCTCTACTCTGCTTCGGTGCGACGCGACTTGGGCTTGTGAGCTC