CANTATAdb - search

Detailed information on CNT30115577

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004177, E-value = 1e-18

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691142	Oryza nivara	Oryza sativa	94.21	49.72	96.75	1138	forward
CNT30596274	Oryza nivara	Oryza meridionalis	26.9	58.14	97.23	325	forward
CNT30369613	Oryza nivara	Oryza glumipatula	45.53	50.64	98.18	550	forward
CNT30100326	Oryza nivara	Oryza rufipogon	36.18	100	94.28	437	forward

Expression of CNT30115577

Peptides detected in this lncRNA

>peptide 1 (72 aa)
VELTCQRRASPSTPLRRVAQPHSPSQSRRIRERRPSTSPLLSSPSQAAGETTVDSLSEPRQSPGTKASPMMP*

>peptide 2 (56 aa)
GADVPTPSFTLNSSQTRRPATLTIPEPTNPREKALYLSAALISITGRRRDDRRQPL*

Sequence

>CNT30115577
GTGGAGCTGACGTGCCAACGCCGAGCTTCACCCTCAACTCCTCTCAGACGCGTCGCCCAGCCACACTCACCATCCCAGAGCCGACGAATCCGAGAGAGAA
GGCCCTCTACCTCTCCGCTGCTCTCATCTCCATCACAGGCCGCAGGAGAGACGACCGTCGACAGCCTCTCTGAGCCACGCCAATCGCCGGGAACGAAAGC
CTCGCCGATGATGCCCTGAAGCACGCACCGGAGCGCCGCTGTTTCGTCATCATTGTCGCCTGGCCGAATCCATCTATCTCAAGCCAAGCCGCTGCACCGT
GAAGTTTTCCTCGACTTCCTCTTCAAGACGCCTCAAGAATCACTATCGGAGACACTAGGAACACGGAGAACACGCCCCTTTTTCCTCGGCGCCGATCTGA
ACCTGCCACCGTCGCTACTGCCGAATCCATCCTCTCCGTTCTTGGAGCTGTTCAAGCTATCATCGTCGACCCAGAGGAGATTGCCGCCGCCGAGCAGTTG
CACGAGTCACCGTCACCCACCAAGCTTTGCCAGTCTTGTCTAGCATCTCGATAATTGCATAATCGGTGAAGGAGTGGATTAGGTACTAACATTTCTCTGA
TCAAGGCAAGTTTTCTCCTCCCATCCTTTGAACACATTGAATTTCATGATTTGAGGAATGAAAATATTTGTTTGCAAAGTTGCATATGAACTTAGATTAT
ATCGGTATTTGAAATTGGATTAAGGTAGTTATGACCTATTTGCTGCATACCCCACCTTGAATAATTGATCCTCTTGCTGTTTGAACTCCTAGAAATGGTT
AAAAGAACACTCTTTGTGCTCAAATGGGTTTATATATGCTCTATGTGCAATTACTTGCTTAGCCATGCTTAGAAATATGCAAATGCTCATTCCATCTATA
ATTAAAATGTGGTTTTGATACTTGAACCTTTGCTGGAATAAAATGAATATGATGGGTATTTGTGAACTAAAATATGTAAAATGTGATTTTATACCTGGGC
GGCAAGTGGTGTGCATATGGTGTTAGTTGCATACCGATAGGGGGAGTGTTTGCCCAAGTCCATAAGGACCGAACTTGTGTCACCCATTTAAAGTTATTTG
TACATCCACATGTGCTAGTATGGGATGGCCTAAGCTGATTAATCTATTTAGGACTAGCCTTGCATTCTAGTAGGCCGGTGTGTGTGAGTTCGTATAATTC
AGAGGAGC