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Detailed information on CNT30115572


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690462Oryza nivaraOryza sativa29.349.81100269forward
CNT30555942Oryza nivaraOryza glaberrima25.9335.7499.58238forward
CNT30369360Oryza nivaraOryza glumipatula38.5645.9798.59354forward
CNT3099818Oryza nivaraOryza rufipogon45.4249.9498.8417forward
CNT30574577Oryza nivaraOryza barthii29.7434.399.63273forward

Expression of CNT30115572

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASSSSPSSSSCSCCSPAAARRRRAAAASACTD*

>peptide 2 (46 aa)
MGKVCLLVIDENLFNGILLVAIVVIMFMLLAGGGAPPPRRRGFCVY*

>peptide 3 (31 aa)
MSWRSLQFITFFFGKKKKLSCWWQVATVVSL*

Sequence

>CNT30115572
CTTGGTTCTGGAAGTTGACCCAGAAAGAGAGACAGAAAGCATCCATTCTCTCACACACACCTCGATAAGTCGATATAAATAGAGTAAGATGATTAGTGTA
GAGAGAGATCATTATTAGCATTCGATCTGCTTCTTCGCCATCGAAGTAATTAATCAAATCGGAGGAGATCATTAGCAAATTATCAGCTTGGGCTTCATGG
GGAAGGTGTGCCTTCTCGTCATCGACGAGAACCTCTTCAATGGCATCCTCCTCGTCGCCATCGTCGTCATCATGTTCATGCTGCTCGCCGGCGGCGGCGC
GCCGCCGCCGCGCCGCCGCGGCTTCTGCGTGTACTGACTGACCGGCCGGCGAGTGAAACCATGAACAACACTGCAGGTGCAGGTCGAGCTTGATTTCTAA
GCTTTTAGTTTGTGTTTTTTTTTCTCCTTTTTTTTTCTTTTTCTTTTGTCCGTGCGATGAAGCTAGCTCGTGATTTCTTCTTCTTCATGTTTTCGGGAGT
AATTAATTAACGTGTTCTTGTGTAGAAATATATGTGAAGGATTTTCTGTTTGATCAGGGCATGTCTTGGAGGAGTTTGCAGTTCATAACTTTTTTTTTTG
GTAAAAAAAAAAAGTTGAGTTGTTGGTGGCAAGTGGCAACGGTGGTCTCTCTGTAGAATTGTTGTGTAATTTGTTCAATATATATTGTATATAGTAACAA
CAGATATTTATTTGAGATTCATTGCATCTTACAGGCTTATGGGTTAGTTACTTTGTATTGATTTCTTTGAATAACAGTGGTTTATGTGACCCAACTGTTA
ACGATAAAATTTGATTTTTTACATCAACACCAACATAAACCACTTCTCCTTCTGTACCAAAATATAAACAATTTTAAATGAATGTGACACATCTACTGTG
AATTTGGATAAATTTTAT