Detailed information on CNT30115557


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5JN63|CESA4_ORYSJ, E-value = 9e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674310Oryza nivaraSetaria viridis23.3450.8888.89144forward
CNT30532104Oryza nivaraEucalyptus grandis12.9721.5183.7580reverse complement
CNT30499576Oryza nivaraCoffea canephora30.9633.9979.58191forward
CNT30314318Oryza nivaraCamelina sativa19.7739.8783.61122forward
CNT30100005Oryza nivaraOryza rufipogon21.7257.51100134forward

Expression of CNT30115557

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MNGSILTQRREKTEASRTDQSTTMVGVRFWRPMRPLRKGYKCMITHMAKNTLPKSGPQDS*

>peptide 2 (38 aa)
MTQNCSLRHQSSMPMPLHRSSRTLVTMMEMKRPRNHMVA

Sequence

>CNT30115557
CCAATTTCAAGTTCACCGAAGAAAACCTTTTCTTTCCCCCTCTTTTTTCTACAAGTATGATTAAACGGATTTAACGGTGCCCTCTCATAGTTTCAGCGGC
TTCAACATCAAAACTTCTTATATCACAGACAATAACAATACAATGAACGGGTCGATCTTGACCCAGAGGAGGGAGAAGACGGAGGCGAGCAGGACAGACC
AGAGCACGACGATGGTGGGCGTCCGGTTCTGGCGACCCATGAGACCCTTGAGGAAGGGGTACAAGTGCATGATCACCCACATGGCGAAGAACACCTTGCC
GAAGAGCGGGCCCCAGGACTCGTAGCCGCTGTTGAGCGCGTCGGCGGAATCAGCACCGTCGTCCACTTGAACACGTACAGCTCGCCGAACTCGGTGTCGT
CCGTCGCCTTGGCCGTAACGGTGAAGTTGGTGTCCAGCCCAGCAATCATCTTGAGGATACCCTGGAACACGGCGAAGAGGTGGGCGGAGACGCCACCGAT
GACCCAGAACTGCTCGTTGCGCCACCAGTCCTCGATGCCGATGCCACTCCACCGCAGCTCCAGGACGCTCGTCACGATGATGGAGATGAAGAGGCCAAGA
AACCATATGGTTGCAGC