Detailed information on CNT30115548


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690731Oryza nivaraOryza sativa10027.4899.21631forward
CNT30369193Oryza nivaraOryza glumipatula98.8958.0599.04624forward
CNT3099794Oryza nivaraOryza rufipogon98.8960.1299.2624forward
CNT30574690Oryza nivaraOryza barthii10027.999.05631forward

Expression of CNT30115548

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MLSKSSFDSILFRPLQRRERDLVYGSSGARSKRRRSQHRRRSDRCRPSQAEPSRQRLLLEVLLKTPQ*

>peptide 2 (59 aa)
SLSTPKPKKPRERAPTLPLHLSFVVGRRKGGRRRSPTSRLHPYLIHVLLSSLHAEQILF*

>peptide 3 (75 aa)
MAQQVRRSATVFFTSGCRRHCRFRLLRSSSSRSSRRRSPAEGRRRREDARAVAVTKTLEKFNLTRDDCLIGEEVI*

>peptide 4 (43 aa)
HCPPLSRRNPGRELQLSLSTSLSSSAAEKGDAADRQRVVSIPI*

Sequence

>CNT30115548
TTCACTGTCCACCCCTAAGCCGAAGAAACCCAGGGAGAGAGCTCCAACTCTCCCTCTCCACCTCTCTTTCGTCGTCGGCCGCCGAAAAGGGGGACGCCGC
CGATCGCCAACGAGTCGTCTCCATCCCTATCTGATTCACGTTCTATTATCTTCTCTCCATGCTGAGCAAATCCTCTTTTGACTCCATCTTGTTTCGTCCA
CTGCAGCGACGGGAACGCGACCTCGTCTACGGGAGCTCTGGAGCGCGCTCCAAGCGCCGCCGCAGCCAACATCGTCGCCGTTCCGACCGCTGTAGACCGA
GCCAAGCCGAGCCGTCACGCCAACGCCTTCTCCTTGAAGTCCTCCTCAAAACCCCTCAATAATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCAC
CGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGCAGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGC
CGTCGCCGGGAGGATGCGCGAGCCGTTGCTGTCACCAAGACCCTGGAAAAGTTCAACCTAACCCGCGATGATTGCTTAATCGGTGAAGAAGTGATTTAGG
TGCTGACTTTTTCCAGTTACAAGGCAAGTCC