Detailed information on CNT30115525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689906Oryza nivaraOryza sativa10025.9499.2628forward
CNT3099957Oryza nivaraOryza rufipogon10026.2499.2628forward
CNT30574836Oryza nivaraOryza barthii10067.4599.04628forward

Expression of CNT30115525

Peptides detected in this lncRNA

>peptide 1 (59 aa)
SLSTPKPKKPRERAPTLPLHLSFVVGRRKGGRRRSPTSRLHPYLIHVLLSSLHAEQILF*

>peptide 2 (43 aa)
HCPPLSRRNPGRELQLSLSTSLSSSAAEKGDAADRQRVVSIPI*

>peptide 3 (67 aa)
MLSKSSFDSILFRPLQRRERDLVYGSSGARSKRRRSQHRRRSDRCRPSQAEPSRQRLLLEVLLKTPQ*

>peptide 4 (74 aa)
MAQQVRRSATVFFTSGCRRHCRFRLLRSSSRSSRRRSPAEGRRRREDARAVAVTKTLEKFNLTRDDCLIGEEVI*

Sequence

>CNT30115525
TTCACTGTCCACCCCTAAGCCGAAGAAACCCAGGGAGAGAGCTCCAACTCTCCCTCTCCACCTCTCTTTCGTCGTCGGCCGCCGAAAAGGGGGACGCCGC
CGATCGCCAACGAGTCGTCTCCATCCCTATCTGATTCACGTTCTATTATCTTCTCTCCATGCTGAGCAAATCCTCTTTTGACTCCATCTTGTTTCGTCCA
CTGCAGCGACGGGAACGCGACCTCGTCTACGGGAGCTCTGGAGCGCGCTCCAAGCGCCGCCGCAGCCAACATCGTCGCCGTTCCGACCGCTGTAGACCGA
GCCAAGCCGAGCCGTCACGCCAACGCCTTCTCCTTGAAGTCCTCCTCAAAACCCCTCAATAATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCAC
CGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTCCGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCGT
CGCCGGGAGGATGCGCGAGCCGTTGCTGTCACCAAGACCCTGGAAAAGTTCAACCTAACCCGCGATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGC
TGACTTTTTCCAGTTACAAGGCAAGTCC