Detailed information on CNT30115505


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH4|PSAA_ORYNI, E-value = 6e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526549Oryza nivaraPhaseolus vulgaris47.8930.9188.73204forward
CNT30201934Oryza nivaraPisum sativum87.7922.8983.16374forward
CNT30491131Oryza nivaraOlea europaea36.625.8589.1156forward
CNT30167792Oryza nivaraPistacia vera30.0538.6788.28128forward
CNT30194074Oryza nivaraSecale cereale58.6926.0490.4250forward
CNT30224362Oryza nivaraHordeum vulgare57.7515.4995.12246forward
CNT30688863Oryza nivaraTriticum urartu100.720.492.31429forward
CNT30365705Oryza nivaraSorghum bicolor39.4431.6495.24168forward
CNT30430934Oryza nivaraPapaver somniferum100.76.5786.95429forward
CNT3057361Oryza nivaraAmborella trichopoda52.584.4587.05224forward
CNT30147758Oryza nivaraBrachypodium distachyon80.0538.0290.03341forward
CNT30585620Oryza nivaraEchinochloa crusgalli100.78.3691.38429forward

Expression of CNT30115505

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIPGGYLTCSPSPRPIAREAKTKICFIGYQTGTASK*

>peptide 2 (35 aa)
MFPLAQAHRKGSENQDLLYRVSNGNCEQIKQLSKVL

Sequence

>CNT30115505
CAAGCCAGCAACGCATGCCGCTGAATAAAAACATTAAACTGAAGGCCCAGACAAAATGAGCACCTAAGAAAAAAAGACCATATGCGGATAATGAAGAACC
ATAAGACTGAATTACTTGGGATGCCTGTGCCCACAAGAAATCTCGGAGCCACCCATTAATCGTAGTGGAACTCTGTGCAAAGTTACCACCCCTTGATCAC
TTATAGTACCCCAAACATCCGACTGCATTTTCCAACTGAAATGGAAAATGACTACCGAAATGGAATTGTACATCCAGAATAGACATAAGAAAACATGATC
CCAGGCGGATACTTGACATGTTCCCCCTCGCCCAGGCCCATCGCAAGGGAAGCGAAAACCAAGATTTGCTTTATCGGGTATCAAACGGGAACTGCGAGCA
AATAAAACAACTTTCAAAAGTATTAA