Detailed information on CNT30115488


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000626, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552010Oryza nivaraOryza glaberrima24.940.8399.68316reverse complement
CNT3066602Oryza nivaraLeersia perrieri29.3927.8686.33373forward
CNT30109999Oryza nivaraOryza longistaminata75.8173.5597.19962forward
CNT3099527Oryza nivaraOryza rufipogon83.6169.4499.531061forward
CNT30574705Oryza nivaraOryza barthii83.5375.6699.721060forward
CNT30550371Oryza nivaraOryza brachyantha31.1314.7389.11395forward

Expression of CNT30115488

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MHCCRLYMKPNEIQEPYVDCRTNYFPSKEGEILVELYCLWCPAV*

>peptide 2 (44 aa)
MLPDCAEEEQLIHDDEFYQESSGDIDTPLPSSCRDGEGRPAKVV*

>peptide 3 (57 aa)
MGCMQGSGVRPLLGVERNPEEGSSMEDAVLGFIYREYMRFLSQSGSLGGGVPFRRPK*

>peptide 4 (48 aa)
MNSFQQRLAGRFRDPTTPHWSSLRKRGGVELLDFLVYMFYASELWHAH*

>peptide 5 (61 aa)
MEKEDLPKLFSCPTWPSTCLVDTFAASAVEASSSTPPAKLRSSENTAWVACRAAVSGHCWG*

>peptide 6 (61 aa)
MIWPGPCVCCYQTGLGQVGLMPALVFMPINRGRAQNKSFNRTLMFMFQCILTELWTCGYNL*

>peptide 7 (58 aa)
MRFMNNNLDDEYTLDVLEYLDEAWAGKLVLVVITRSRSCVMDLLSRCSLAGLALCLSD*

Sequence

>CNT30115488
ATCCTCTAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATACGAAGGGGA
GGACATGAACAGCTTCCAGCAGAGGCTCGCGGGGAGGTTCAGAGATCCGACCACACCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGTCGAGCTACTA
GATTTTCTGGTCTATATGTTTTATGCTTCAGAGCTGTGGCATGCTCATTGACTTATGGATCTATGGATAACTATTTTAGGTCAGCACCTAGCTGATGCTT
CCAGACTGTGCCGAAGAAGAACAACTGATACATGATGACGAATTCTATCAAGAGAGCTCCGGGGATATAGACACTCCATTACCATCTTCTTGTCGAGATG
GAGAAGGAAGACCTGCCAAAGTTGTTTAGTTGCCCTACATGGCCTAGCACCTGCCTAGTGGATACCTTCGCTGCATCGGCCGTTGAGGCATCGTCTTCAA
CACCACCGGCGAAGCTGAGAAGTAGTGAGAACACTGCATGGGTTGCATGCAGGGCAGCGGTGTCAGGCCATTGTTGGGGGTAGAGAGGAATCCAGAAGAA
GGGTCCTCCATGGAAGATGCTGTGCTTGGTTTCATTTATAGAGAGTACATGAGGTTTCTTTCACAAAGTGGAAGCTTAGGTGGTGGAGTGCCTTTTCGCA
GACCGAAATGAGGTTTATGAACAATAATTTAGATGATGAATACACTCTAGATGTATTGGAGTACCTTGACGAAGCATGGGCTGGAAAGTTGGTTTTGGTG
GTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGGTGCAGTTTGGCTGGTCTTGCATTGTGCCTGTCAGATTAGTGCTGTACTTGATGCA
TTGTTGTCGTTTATACATGAAACCAAATGAAATACAAGAACCATATGTAGATTGCAGAACAAATTATTTTCCTTCTAAAGAGGGTGAGATCTTAGTAGAA
CTTTATTGCTTGTGGTGCCCTGCTGTTTGACAATGTAATTGGTGCGAGACACTGGCATATGATCTGGCCTGGGCCTTGTGTATGTTGTTATCAGACTGGA
CTAGGCCAGGTGGGCCTTATGCCTGCTTTGGTCTTCATGCCAATAAACAGAGGGAGGGCCCAAAATAAGTCCTTTAACAGGACACTGATGTTCATGTTCC
AATGTATACTTACGGAGTTGTGGACTTGTGGTTATAACTTATAAGTTGCAAGGGACAGATATTGCCCAA