Detailed information on CNT30115482


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004253, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689944Oryza nivaraOryza sativa99.836796.34601reverse complement
CNT30554464Oryza nivaraOryza glaberrima101.520.8993.13611reverse complement
CNT30371012Oryza nivaraOryza glumipatula83.8916.5893.47505reverse complement
CNT30107829Oryza nivaraOryza longistaminata101.6634.2793.63612reverse complement
CNT30576894Oryza nivaraOryza barthii101.6674.8294.44612reverse complement

Expression of CNT30115482

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTCSTSHTANIQVYKDTKRWHNIGSFVKAAFSNYLRIVK*

>peptide 2 (30 aa)
MSTMRRDTGKYPNRGFDNTLCTTQLTTVHHS

Sequence

>CNT30115482
GCGATGGCTTCAGCTCCACTTCCACAGGCGGCTCAACCGGGGTATAAACCAAACGTCTTCTCCTTCTGGATCCTTTTTCTTTAACTGAGGTTGATTGATT
ATTGCAAGGCATATGACATGCTCAACAAGCCACACAGCAAATATTCAAGTGTACAAGGATACCAAAAGATGGCATAATATAGGCTCATTTGTAAAAGCAG
CATTTAGCAACTATTTAAGAATAGTAAAATAGTAGAGTAATCATCAATTTTAATCAACACTGAACAGCACGCCCATGCTGCTCAGGCCCAACCATCCTGA
ACAACCATACCCGGCTGTACAGATCTAACTCCAAACCAGGAGCTAAGCAAATTATTACCAGTTATAGCATCAATAATTATTGTGAGAGGTGTGAGACTAA
TCACGAAAAACATTGCTCAACTCGCCCATAACCGCGGGCACGGCTATTCGAATAGTTTTACTCTGGCCAGAGGTGTACCACTGTACCCACAAGACACAGC
CTCAACATCATGTCTACCATGCGTCGCGATACTGGAAAGTATCCGAATAGAGGCTTTGACAATACCCTCTGCACAACACAACTCACCACAGTGCACCATT
CC