Detailed information on CNT30115470


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006944, E-value = 4e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694181Oryza nivaraOryza sativa26.1728.0293.07274forward
CNT30552962Oryza nivaraOryza glaberrima26.7465.8893.57280forward
CNT30369559Oryza nivaraOryza glumipatula24.5553.9993.39257forward
CNT30109442Oryza nivaraOryza longistaminata15.6660.0793.9164forward
CNT30576966Oryza nivaraOryza barthii26.1715.5294.16274reverse complement

Expression of CNT30115470

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MLAQAKKAAKKAVLKQSTSMCQMVVSPRSRLRPCRRGCLWSGVPAADQVKA*

>peptide 2 (65 aa)
PTRARSSGRHRRETLSPTHTQATQRSRARRRRRRRHRPPPDSSPPPVLHPRPSERSNGGRRRAAA*

>peptide 3 (53 aa)
PDESSQFRTSSARNPFPHTHTSHPEKQSSTTPPPPPPPSSRLQSSPRPPSSSI*

>peptide 4 (74 aa)
RRELAVQDVIGEKPFPPHTHKPPREAELDDAAAAATALLQTPVLPPSSILVHLSGAMAGGDAQQHRCSTPGASS*

Sequence

>CNT30115470
CCCGACGAGAGCTCGCAGTTCAGGACGTCATCGGCGAGAAACCCTTTCCCCCACACACACACAAGCCACCCAGAGAAGCAGAGCTCGACGACGCCGCCGC
CGCCGCCACCGCCCTCCTCCAGACTCCAGTCCTCCCCCCGTCCTCCATCCTCGTCCATCTGAGCGGAGCAATGGCGGGAGGCGACGCGCAGCAGCATAGG
TGTTCAACACCCGGCGCGAGTTCGTGAATCATAAGTGCTCCAACACTCGTCTATTCATGCTCGCCCAGGCCAAGAAGGCCGCTAAGAAGGCAGTCCTGAA
GCAGAGTACGAGTATGTGTCAGATGGTGGTTTCTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATGCCTGTGGAGTGGTGTTCCCGCTGCAGATCAA
GTCAAGGCTTAGCTCCAGTTATCTTTTGTTTTTCCGCTGCATTTATGTAAGACTTTTATAATATTTGTAAGACGTGGATCTGTATATCAACTTTGTCGTT
TGTGTACCCCGGCCTGTCCTGGATGGGGATTTTAATGCACATTCTGCTTGGAATTCTATTCGGGAATTTCTGAGCGTGACACTCTCTCTGTCCCAAAATA
TAACAACTTTTAGCCCTTCGGATTTGTCCCAAAATATAACAACTTCTCCACCAACATTCTCTTCCCAACCAATCACAACCCTCCACCATTCACTTTTCTC
ACCTACCTCCGCTACTTATCCAATCTCAACCCTCCACCATTTACTTCTACCTACTTTCTTAATAACCGTGTCCAACAATAAAACTTCTTATATTCTGGGA
TTGAGGGAGTAAGTATCATAAAAATGAAGGTAGATGATTATATATTGATTTGTATAATTCAATGAATTGTAAATGGTGTTGTATGCTTGGATGAGTTTTG
TATGTAACTATTGCTAGTAGATGAGATGATATGTTTGCACGTTAAGTTTTAGAATTAGTGGGTTGTAACTTTATAAATAGTATAGATTGTGGAGGCAAGT
AGAGTAGTAGAAGAAGAGGAAAGGGGCATATTAGTCCTAAAAATCTT