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Detailed information on CNT30115468


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 3e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690829Oryza nivaraOryza sativa7.4246.89100256forward
CNT30619448Oryza nivaraSesamum indicum6.7820.5691.88234forward
CNT30197509Oryza nivaraPisum sativum15.0622.8595.77520forward
CNT30182368Oryza nivaraSecale cereale39.956897.321379forward
CNT30299594Oryza nivaraTriticum aestivum19.7690.2199.27682forward
CNT30220987Oryza nivaraHordeum vulgare13.9922.7699.17483forward
CNT30385170Oryza nivaraTriticum turgidum39.9297.9496.881378forward
CNT30586133Oryza nivaraMusa acuminata18.3128.5887.18632forward
CNT30555411Oryza nivaraOryza glaberrima4.1135.24100142reverse complement
CNT30437984Oryza nivaraAegilops tauschii10.6997.6298.92369forward
CNT30467405Oryza nivaraSaccharum spontaneum40.1285.4497.111385forward
CNT30210175Oryza nivaraHelianthus annuus10.495.4893.04359forward
CNT30595572Oryza nivaraOryza meridionalis5.7623.2296.98199reverse complement
CNT3056795Oryza nivaraAmborella trichopoda11.5975.1993400forward
CNT30104639Oryza nivaraOryza rufipogon28.6890.16100990forward
CNT30577102Oryza nivaraOryza barthii6.0592.07100209forward

Expression of CNT30115468

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MRREGSRGLSRGSLFPIHPEGFFPSLAPSSYPVLLSAQPYLFISIFLLFYFLISLLVHRS*

>peptide 2 (56 aa)
MGSLETNRRFLHFDPGPPEMENPKDMFETWLRVRRSPFRCWTWNLNKDEYSVLNSD*

>peptide 3 (75 aa)
MPPGRKERGRHSLSFLNRSDHFSHSLLFVWWGPGLVRFLLLSTQFSVFVRDHLRRKDRYQFCGGAAVKGRFPLFH*

>peptide 4 (61 aa)
MEEPSKPVPDDDAPWAKGKGPPFSFFPQSFRSFLSFPFVCLVGPRVGSFPPPIYAILRLRS*

>peptide 5 (86 aa)
MRKKDRRAGFVASGEFILGKKGEGSHQSYAKGRKSWAEPGVTFPDPSRRFFSLSRPIIVPSPAIGSALSIHLYFFTFLFFDLSSCS*

>peptide 6 (76 aa)
MFATVLFSTVSDFLIFLVRKKSLLHKYSPLLALVSGATGGIRAAREEAVAVVELVLHTLLDKEGKARRISTGEKVI*

>peptide 7 (94 aa)
MQKGAAGNRFCREVGHKVFICAKKRLLKPAQREKMEKECPFILPKKAIKFEKEIDKFLVVKASENLMAAGRRGVGTSLLLARRMEMAGEEHGGK*

>peptide 8 (90 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGGRRLIQVPPEPREMVAYYTAHKLCLGWGYLLFVGGTYGARRASVCCVDCLCISYRV*

>peptide 9 (54 aa)
MLKLAGVRGRWNSYLPHFFLHFQLEEEEASLFASSIDRKKDLDLKPSTKERESW*

>peptide 10 (52 aa)
MHFLQSVMEPSSAPPSQKERKEQNSRRRRVEYSQGAFVVRKGPNGRPCSEVH*

>peptide 11 (30 aa)
KELGVGAYITGSLLTKPSWQAPTVLLLFLT*

>peptide 12 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

>peptide 13 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

>peptide 14 (37 aa)
MFLKQVLQTIVLTSHSPPKVPELFLVHMQPELCCSLI*

>peptide 15 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 16 (49 aa)
MGESRFLVEFQSPRLLRWGPLKRIEGFFTLTPDPRRWRTLRICLRHGSG*

Sequence

>CNT30115468
GAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTATTCTTGACTTGACTTATT
AATAAGAAAACTGCTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAATGGAGTTGAA
CCAAGTAACATTGCAAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGAGATACCATAAGGGC
CCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTCAAAACTTGATCGAA
GAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGAGATTGACATTATACGCT
AGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTACGA
AGGGGGAATTGGCCCAAAAATTGGATAGGGGTAAAGACGCAGCCGGGGGCCGGCGGCTTATTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTA
CACGGCTCACAAACTCTGCCTGGGGTGGGGCTACCTATTATTCGTAGGCGGTACGTACGGCGCACGCAGGGCCTCGGTTTGCTGCGTGGACTGTCTATGC
ATTTCCTACAGAGTGTAATGGAACCCAGCTCAGCTCCGCCGAGCCAAAAGGAAAGAAAAGAACAGAACAGCCGGAGGCGAAGAGTAGAGTATAGCCAAGG
GGCTTTCGTCGTCCGTAAAGGACCTAACGGAAGACCGTGCTCCGAAGTGCACTGAGAGTTTTGTTTTAAGAACACTTGGCCTTACCCCTTCGTTTTGAGC
CATGTAATCGGCAAGATTGAACCGAGGCCCGCCCGGGCACCGCCGGGGGGACAACCAGTAGGCTTTCTTTCCGAAGTTTCCTCCCGGGGCCCTTAAATCA
TTGAATTCATAGGCATAAGGGCGTCCCAGGCAGTGGTTCATTCAATGAGAAAGAAAGACAGGAGGGCAGGATTCGTCGCGTCGGGCGAATTCATTCTGGG
AAAAAAGGGGGAAGGGAGTCACCAGAGCTATGCGAAGGGAAGGAAGTCGTGGGCTGAGCCGGGGGTCACTTTTCCCGATCCATCCCGAAGGTTTTTTTCC
CTCTCTCGCCCCATCATCGTACCCAGTCCTGCTATCGGCTCAGCCCTATCTATTCATCTCTATTTTTTTACTTTTCTATTTTTTGATCTCTCTTCTTGTT
CATAGATCTTGAAAGCGGATCAATAGAAATTTATCAAAGGATCTATCTATAGAAAGATCTAGATCTCTATCATCATCTATCTCTATATCTAAATATGGAA
GAACCCTCGAAGCCTGTCCCCGACGACGATGCCCCCTGGGCGAAAGGAAAGGGGCCGCCATTCTCTTTCTTTCCTCAATCGTTCCGATCATTTCTCTCAT
TCCCTTTTGTTTGTTTGGTGGGGCCCCGGGTTGGTTCGTTTCCTCCTCCTATCTACGCAATTCTCCGTCTTCGTTCGTGATCATCTTAGGCGAAAGGATA
GGTATCAATTTTGTGGAGGGGCGGCTGTGAAAGGGCGATTCCCCCTTTTCCATTGAAGTAGGGAAGGGGGTGATTGATCTTTTTTGAATCAGGCCTTACT
GACCAAGTGGTGGTATAAGCTTCATTGCGGATGAAAAGAAGTCCTTGTGAGCGGAGCTACAAAAGGAAGTTCAAGCTCAAGAAATCCTCTCAATAGGGAT
TGGGCAAGCAAGCTGTTTGTTTATTTGATCTTACCCGGTTGTGAGACGGGACGTGAAGTCAACCAAGTACATGTGTGTTCATAGTGTCCCCGGCACCTTC
CTCCTAGCTGAGTATGGATGCTGAAGTTAGCTGGAGTGCGTGGTAGATGGAACTCCTATTTACCGCATTTCTTCTTGCACTTCCAACTTGAAGAGGAAGA
AGCATCTCTCTTTGCATCTTCAATAGATAGGAAAAAGGATCTTGACCTGAAGCCTTCGACCAAAGAAAGGGAGAGTTGGTGAAGTCAGAGGTGTTCCCTA
GATTCATGGAAGGACTTTTTGACTCTAAGGTTTAAAATTGATCGAGAAATGAATGATGAGTTGTTTAAGTTCCTGCTGAATCCACTATTATCGATGTAGG
TAGAAAGGGCATAAAGCCACGGAATGCAGAAGGGAGCAGCAGGAAATAGATTTTGCAGGGAAGTGGGGCATAAAGTGTTTATCTGTGCCAAGAAAAGGCT
ATTGAAGCCGGCCCAGAGAGAAAAAATGGAAAAAGAGTGTCCTTTTATTCTCCCAAAAAAGGCGATCAAGTTTGAGAAGGAGATAGATAAGTTCCTTGTG
GTCAAAGCTTCGGAAAACCTCATGGCGGCCGGCCGACGTGGAGTGGGAACTTCACTACTACTGGCGCGACGGATGGAGATGGCTGGCGAGGAGCATGGGG
GAAAGTAGATTCTTGGTTGAATTTCAAAGCCCTAGGCTCTTGAGATGGGGTCCCTTGAAACGAATAGAAGGTTTCTTCACTTTGACCCCGGACCCCCGGA
GATGGAGAACCCTAAGGATATGTTTGAGACATGGCTCAGGGTGAGAAGGTCCCCGTTCAGATGTTGGACGTGGAATCTCAATAAAGATGAGTATTCTGTT
CTCAATTCCGATTGAATGGACATCTGTTTTATTTCAAGAAGATCCCCAAGTAAGGCACTAGTCTCATATTCTATGAATGCCCACAATCGCTTGTGAAAGA
ATCAGCTCTTCTTTGCATGTTCGCAACTGTCTTATTTAGTACTGTTTCAGATTTCCTGATTTTTTTAGTGCGAAAGAAATCGTTGTTACACAAGTATTCA
CCCTTGCTTGCTCTCGTAAGCGGTGCTACAGGTGGAATAAGAGCTGCTCGAGAAGAAGCTGTAGCTGTGGTTGAGCTAGTGCTTCATACCTTACTGGACA
AGGAAGGAAAGGCAAGGAGGATCAGTACGGGAGAGAAAGTGATTTAAGAATGTGAATTTGATTTGATAAGTAATCAAGGCAATTAGCTTAGGTTCATCCC
GAATCCATTCCATGTTTCTTAAACAAGTCCTTCAAACCATCGTGCTAACAAGCCATTCTCCTCCGAAAGTCCCAGAGCTTTTTCTGGTCCATATGCAGCC
TGAACTGTGCTGCTCTCTGATTTGATTCACTTCCTTTCCATCTCCTCTCCTCGCTTTAGTAGGTTAGGCGAGCGGCTTAATACTTCTCTGCTCAGAGTCA
AAGAGGCAAAGTGCTAACTAAACTACTAAGGAAAGAAATTCCATTCCCTAGG