CANTATAdb - search

Detailed information on CNT30115461

BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 3e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30555732	Oryza nivara	Oryza glaberrima	90.25	50.45	99.35	611	forward
CNT30684612	Oryza nivara	Triticum urartu	47.56	33.06	84.47	322	forward
CNT30604900	Oryza nivara	Oryza punctata	68.54	71.27	90.73	464	forward

Expression of CNT30115461

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TRGIKFGLSIVLHISIVFDDLYNIFITMCMCI*

>peptide 2 (54 aa)
MKLINCTCLTLSKPMMRTNASGYAFLASSSSLSTWVASVHPNIGSFHMVQYLPS*

>peptide 3 (66 aa)
MHALQPMLIHTYVHTYTADVDTNKMKKKTEATNWERGNQCKVARFERSKLPKPNRSIESPLYRAHE*

Sequence

>CNT30115461
ACCAGAGGTATCAAGTTTGGTCTGAGTATAGTATTACATATAAGTATCGTTTTTGACGATTTGTACAATATATTTATTACGATGTGTATGTGCATATGAT
TAGCCTGGTGCTAGCATTCACATATGCATGCTCTTCAACCTATGTTGATACATACATATGTACATACATACACAGCTGATGTTGACACAAACAAGATGAA
AAAAAAAACTGAAGCAACAAACTGGGAAAGGGGAAACCAATGCAAGGTGGCCCGATTCGAACGTTCAAAGCTGCCAAAACCGAATAGATCAATCGAGTCT
CCTCTGTATAGAGCTCACGAGTGAGCTTGCTGGCTTGCCAACTAGCTTAGTTTCCGCCGGACTCCTCGCAACCCGGGGGCTTGTAGGCGATGAAGCTAAT
CAACTGCACCTGCCTGACGTTGTCAAAGCCGATGATGCGAACAAATGCATCTGGATATGCCTTCTTGGCCTCCTCGAGCTCTTTGAGCACCTGGGTGGCA
TCAGTGCATCCGAACATAGGCAGCTTCCACATGGTCCAGTACCTGCCATCATAGTACCCAGGAGACCTGTGGTTCTCACGGTAGACGAACCCGACCTTAC
TAAACTCGAGGCAAGGCACCCATTTGGACCGGAGCAGGGTCTCAAACTTCTTGATGCCTTCAATCGGCCACACCTGC