Detailed information on CNT3011535


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691356Zea maysOryza sativa72.7410098.21169forward
CNT30681720Zea maysTriticum urartu77.2998.9697.341242forward
CNT30557266Zea maysPanicum hallii97.3997.0297.891565forward

Expression of CNT3011535

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMRRRHEGRAIRQVIMNHRIGGQSPRQPFI*

>peptide 2 (32 aa)
MKYECPRLSLLIITPIPKANTIGPESYDVIPC*

>peptide 3 (30 aa)
MKFPKITRACRPRLYTRWIHQCSACAAQNI*

>peptide 4 (43 aa)
MIRFNGLLATSGAANRPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 5 (41 aa)
ETLLRLLLPLNDKVQWTSRDVGGGEPPPSPRSEHFTGPFNR*

>peptide 6 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPINHYSDPEGQHNRTGIL*

>peptide 7 (44 aa)
MRPSRKSGFVARISSRITTVIRVARTIKQTITDLMSHSQFHSSN*

>peptide 8 (49 aa)
MDFSRRRGRRTAPVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 9 (50 aa)
MMLSHANVSRAMACFEHSNFFKVTAPEARPGQLRPGAHRRQKGRAGRFSP*

Sequence

>CNT3011535
CGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTCAATGGACTTCTCGCGACGTCGGGGGCGGCGAACCGCCCCCGTCGCCGCGATCCGA
ACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCAT
TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGAT
ACATCAGTGTAGCGCGTGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAG
AAGCTAACTACGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTCCACGCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCAT
ACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATTAGTAACACCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAG
ACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAA
TCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATAGGACCGGAATCC
TATGATGTTATCCCATGCTAATGTATCCAGAGCGATGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTA
AGGCCAGGAGCGCATCGCCGGCAGAAGGGTCGAGCCGGTCGGTTCTCGCCGTGAGGCGGACCGGCCGGCCCGGCCCAAGGTCCAACTACGAGCTTTTTAA
CTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGTGGCTGCTGGCACCAGACTAGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTA
CTCATTCCAATTACCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCTCCTCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTCCCTTCCT
TGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTTCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAG
TTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCAAGTTATCATGAATCATCGGATCGGCGGGCAGAGCCCGCGTCA
GCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCACGTACCATCAAA
CAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA
CTGGCAG