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Detailed information on CNT30115272


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675387Eutrema salsugineumSetaria viridis28.1933.7486.13137forward
CNT30524663Eutrema salsugineumSetaria italica28.1923.5489.05137forward
CNT30641615Eutrema salsugineumNymphaea colorata49.7943.6888.02242forward
CNT30549212Eutrema salsugineumIpomoea triloba53.58.6291.15260forward
CNT30272552Eutrema salsugineumChenopodium quinoa85.3932.9985.54415forward
CNT30730518Eutrema salsugineumCorchorus capsularis84.1641.4888.02409forward
CNT30632284Eutrema salsugineumVigna unguiculata55.1432.7288.43268forward
CNT30195089Eutrema salsugineumPisum sativum35.810.0191.38174reverse complement
CNT30220801Eutrema salsugineumHordeum vulgare28.1935.3188.32137forward
CNT30397780Eutrema salsugineumTriticum turgidum28.1939.3788.32137forward
CNT30569398Eutrema salsugineumActinidia chinensis102.4725.4988.76498forward
CNT30511593Eutrema salsugineumSolanum lycopersicum78.8158.8384.6383forward
CNT30552690Eutrema salsugineumOryza glaberrima28.198.9589.05137forward
CNT30208971Eutrema salsugineumHelianthus annuus60.2971.8192.83293forward
CNT30720843Eutrema salsugineumTriticum spelta10.2923.269650forward
CNT30347837Eutrema salsugineumEragrostis tef28.1917.7786.13137reverse complement
CNT30363261Eutrema salsugineumSorghum bicolor28.1910.7689.05137forward
CNT30620564Eutrema salsugineumCajanus cajan55.355.290.33269reverse complement
CNT30596724Eutrema salsugineumOryza meridionalis28.195.6689.05137reverse complement
CNT30410483Eutrema salsugineumPapaver somniferum103.0924.4988.42501forward
CNT30642274Eutrema salsugineumCannabis sativa42.5925.3486.47207reverse complement
CNT3037013Eutrema salsugineumCucumis melo102.6763.4989.38499reverse complement
CNT30331560Eutrema salsugineumDioscorea rotundata31.8930.6985.16155reverse complement
CNT30148461Eutrema salsugineumBrachypodium distachyon28.1958.388.32137reverse complement
CNT30104431Eutrema salsugineumOryza rufipogon28.1921.1488.32137reverse complement
CNT30497700Eutrema salsugineumDigitaria exilis28.1925.0588.32137reverse complement
CNT30174415Eutrema salsugineumVigna angularis44.6541.7389.4217reverse complement

Expression of CNT30115272

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNKLKILPFYPKDGGAEAFGVHSRQELEPHNH*

>peptide 2 (46 aa)
PPVAQPRQQWVLCSCGDGVTEVLRIQEKVRVKRAVYHYDRCQVEVQ*

>peptide 3 (41 aa)
MEGLRPLESTPGKNWSLTITSQYAFSHAFLRSWFDILVSQA*

Sequence

>CNT30115272
CCTCCGGTAGCACAGCCGAGACAGCAATGGGTTCTCTGCTCCTGCGGGGATGGAGTGACTGAAGTTTTGAGAATTCAAGAGAAAGTCAGAGTGAAACGAG
CTGTTTATCATTACGATAGGTGTCAAGTGGAAGTGCAATGATGTATACAGCTGAGGCATCCTAACAGACCACTAGACTTGAACCTTGTTTCTACATGACC
TGATCAATTCGATCAGGCACTCGCCATCTATTTTCATAGTTCAACTCTTTGACAACACGAAAAAACCATAGTTCAACTCTTTGACAACATGAACAAACTG
AAAATTCTGCCCTTCTATCCAAAAGATGGAGGGGCTGAGGCCTTTGGAGTCCACTCCAGGCAAGAATTGGAGCCTCACAATCACTAGCCAATACGCTTTT
TCGCATGCCTTTCTTCGTTCATGGTTTGATATTCTGGTGTCCCAGGCGTAAAGGAACAACACCAATCCATCTCGAACTTGGTGGTT