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Detailed information on CNT30115242


BLAST search results

BLAST vs Swiss-Prot:
sp|P10796|RBS1B_ARATH, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514732Eutrema salsugineumJuglans regia20.3611.5185.29102forward
CNT30372132Eutrema salsugineumArabidopsis thaliana33.3325.8595.21167forward
CNT30727202Eutrema salsugineumCorchorus capsularis33.139.5984.94166forward
CNT30525466Eutrema salsugineumPhaseolus vulgaris13.7723.2388.4169forward
CNT30545373Eutrema salsugineumBrassica napus47.939.3488.75240forward
CNT30235546Eutrema salsugineumBrassica oleracea36.7322.1790.76184forward
CNT30146145Eutrema salsugineumMedicago truncatula20.369.685.29102forward
CNT30312471Eutrema salsugineumCamelina sativa37.1324.8394.09186forward
CNT3061892Eutrema salsugineumArabidopsis lyrata37.1323.3494.09186forward
CNT3074948Eutrema salsugineumBrassica juncea57.4941.4489.58288forward
CNT30261376Eutrema salsugineumBrassica rapa34.9343.7592175forward
CNT30613234Eutrema salsugineumArabis alpina34.9330.795.43175forward
CNT30605276Eutrema salsugineumGossypium raimondii30.5438.7383.01153forward
CNT30623489Eutrema salsugineumDaucus carota28.1421.2782.98141forward
CNT30479552Eutrema salsugineumArabidopsis halleri33.3329.0995.21167forward
CNT30355778Eutrema salsugineumLactuca sativa28.5418.1983.92143forward
CNT30335392Eutrema salsugineumCynara cardunculus25.7515.8382.95129forward

Expression of CNT30115242

Peptides detected in this lncRNA

>peptide 1 (44 aa)
GKHKLHIHKSDILTIRSIENVSETEIQEKKKQRQLEMQMRILYE*

>peptide 2 (55 aa)
MNDLRESDLSIGEAWWLVGDETDALDLTGVVESDDPNEGLGVLLLALLHFLQHLS*

Sequence

>CNT30115242
GAGGGAAACATAAATTACATATTCATAAATCAGACATTTTGACAATCCGATCGATAGAAAATGTCTCAGAAACAGAAATCCAAGAAAAAAAGAAACAGAG
ACAATTGGAAATGCAAATGAGAATATTATATGAATGATTTAAGAGAAAGTGACTTAAGCATCGGTGAAGCTTGGTGGCTTGTAGGCGATGAAACTGATGC
ACTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCCTGGGGGTACTCCTTCTTGCACTCTTGCACTTCCTTCAACACTTGAGCTGAGTC
AGTGCATCCGAACAAAGGAAGCTTCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCAACTTCGGTAAGGTCAGGAAGGTAAGAGAGAGTC
TCAAACTTCTTCTTTCCAATTGGTGGCCACACCTATAAATAACATTTCCAATTAATATTACTTCGATTTCGTATATATATATATATGAACTTATAGTGAC
A