Detailed information on CNT30114653


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 1e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712006Eutrema salsugineumGlycine max12.6120.5582.6598forward
CNT30480469Eutrema salsugineumArabidopsis halleri33.9841.1987.5264forward

Expression of CNT30114653

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MATKHTSTKDGEHLQKKRKKKTLYSHTFIILLIQI*

>peptide 2 (29 aa)
MPRTLALRAVHRQTAASRSTKPCMTEQHG*

>peptide 3 (89 aa)
MHLFKLIFFKEETVCGVVCIADSSAFETRWNLLVTLVEKNAERYRNVKVDAENVSPKSSAQTNRSLKINQTLYDRAAWLRRRLTQLNVE*

>peptide 4 (71 aa)
NKTLVKKYIHYTVENRNRWLQNIQAPKTGNICKKKEKKKHYTLTHLLFYLYKFNMYTLNSSLHAFIQTYFF*

>peptide 5 (42 aa)
MTWDRPGIRTWDRWSWDMCGWLRTWAWLQLRFRTTATISCSS*

Sequence

>CNT30114653
AAAATAAGACGTTGGTAAAAAAGTATATTCATTATACGGTTGAAAATAGAAATAGATGGCTACAAAACATACAAGCACCAAAGACGGGGAACATTTGCAA
AAAAAAAGAAAAAAAAAAACACTATACTCTCACACATTTATTATTTTACTTATACAAATTTAACATGTACACATTAAACTCGAGCTTGCATGCATTTATT
CAAACTTATTTTTTTTAAAGAGGAAACTGTGTGCGGCGTCGTGTGCATAGCTGATTCAAGTGCATTCGAAACCAGATGGAACCTTCTTGTTACACTTGTT
GAGAAGAACGCTGAGAGATATAGGAACGTTAAGGTTGATGCCGAGAACGTTAGCCCTAAGAGCAGTGCACAGACAAACCGCAGCCTCAAGATCAACCAAA
CCTTGTATGACCGAGCAGCATGGTTGAGGCGACGGTTGACCCAATTGAACGTTGAGTGAACGGCTTAAGACATTCGTACATACACCGAGCCTGAGGGCAT
CTATAGGACAGTTTCCAGATGAGCCAGGTGTGCTTGGAGTTGGGACCGAAGGACTTGGGACTGGCCTAGGGTTAGGACTTGGGACCGAATGACTTGGGAC
CGGCCTGGGATTAGGACTTGGGACCGATGGAGTTGGGACATGTGTGGGTGGCTTAGGACTTGGGCTTGGCTTCAGCTTCGGTTTAGGACTACAGCCACAA
TCAGTTGCAGCAGTTAAGGTGAAAAGGAGGATGTTAAGAACAAAGAAAAGAGCAAGGGAGACTGAGTTCTTTGAAGC