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Detailed information on CNT30114619


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-139

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376617Eutrema salsugineumArabidopsis thaliana73.5474.0987.55795forward
CNT3019912Eutrema salsugineumCitrullus lanatus84.4654.6482.37913forward
CNT30506305Eutrema salsugineumNicotiana attenuata63.6472.9684.74688forward
CNT30540600Eutrema salsugineumBrassica napus84.5553.5884.9914forward
CNT30312659Eutrema salsugineumCamelina sativa84.5546.4289.72914forward
CNT30260967Eutrema salsugineumBrassica rapa84.2775.186.5911forward
CNT30477817Eutrema salsugineumArabidopsis halleri84.2785.1487.71911forward

Expression of CNT30114619

Peptides detected in this lncRNA

>peptide 1 (44 aa)
RFVLERKDRSERKHSSINYLSRGFTWPQNTEHAKSLKKGNRNDF*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVIVLPVRVFTKICIPPRRRKTK*

>peptide 3 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRSLRTK*

>peptide 4 (31 aa)
MVSELSTSKVMVFPVKVFTKICIPPRSLSTR*

>peptide 5 (91 aa)
MILEPTTKTEDQVKSRLLLDVVIGQGATILKLLSSEDETLLVRRDTFLVLDLGLHVVDGIGALNLQCDCLAGKSLHKDLHTTTKTQDQVKC*

>peptide 6 (60 aa)
MKGRLLLDVVVRKSTAIFELLSGEDQPLLVWWDSLLVLDLSLHVVDGVRTLDLQSDRLSR*

Sequence

>CNT30114619
CGATTTGTCTTAGAACGAAAGGATAGATCAGAACGCAAACATAGTTCCATCAATTATTTATCTAGGGGCTTTACATGGCCCCAAAACACAGAACACGCGA
AGTCTTTAAAGAAAGGAAACAGAAACGACTTTTAAAACCAGAGACGCACGAAATATGATTCTAGAGCCCACCACGAAGACGGAGGACCAAGTGAAGAGTC
GACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGT
CCTGGATCTTGGCCTTCACGTTGTCGATGGTATCGGAGCTCTCAACCTCCAGTGTGATTGTCTTGCCGGTAAGAGTCTTCACAAAGATCTGCATACCACC
ACGAAGACGCAAGACCAAGTGAAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTT
TGCTGGTCCGGTGGGATACCTTCCTTGTCTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGTTTTTCCGGTCA
AAGTTTTCACGAAGATTTGCATACCACCACGGAGCCTGAGCACTAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCATCTTC
GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCAGAACTCTCG
ACCTCCAAAGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGT
TGTAATCGGCCAAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTT
AACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATCTG