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Detailed information on CNT30114617


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 2e-112

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513431Eutrema salsugineumJuglans regia86.5770.1285.36683forward
CNT30540607Eutrema salsugineumBrassica napus86.4446.2186.36682forward
CNT30235037Eutrema salsugineumBrassica oleracea86.0628.1285.13679forward
CNT3074551Eutrema salsugineumBrassica juncea86.0675.0387.33679forward
CNT30260853Eutrema salsugineumBrassica rapa86.0675.6187.48679forward

Expression of CNT30114617

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MILEPTTKTEDQVKSRLLLDVVIGQGATILKLLAGEDQPLLVRGDTFLVLNFGFHVVDGVRALNLQSNGLSGQIFTKICIPPRSLSTR*

>peptide 2 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRSLRTK*

>peptide 3 (60 aa)
MKGRLLLDVVVRKSTAIFELLSGEDQPLLVWWDSLLVLDLSLHVVDGVRTLDLQSDRLSR*

Sequence

>CNT30114617
ATCTAGGGGCTTTACATGGCCCCAAAACACAGAACACGCGAAGTCTTTAAAGAAAGGAAACAGAAACGACTTTTAAAACCAGAGACGCACGAAATATGAT
TCTAGAGCCCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCAAGCTGCTTGCCGGC
GAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCTTGAATTTTGGCTTTCACGTTGTCGATGGTGTCAGAGCTCTCAACCTCCAAAGTAATG
GTCTTTCCGGTCAAATTTTCACGAAGATTTGCATACCACCACGGAGCCTGAGCACTAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGT
ACGGCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTG
TCAGAACTCTCGACCTCCAAAGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGATCTGCATACCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATT
CCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCCTG
GATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCA